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Experiment Chicken_E3_aorta, section s21.

Sample reads: 235,870. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5439.00 23060.88
2. RPS10 ENSGALG00000002813 2592.00 10989.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
3. EEF1A EEF1A 2506.00 10625.22
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2374.00 10065.55 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. gga-mir-3533 ENSGALG00000027736 2307.00 9781.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPL4 ENSGALG00000007711 2107.00 8933.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. RPL13 ENSGALG00000006179 2032.00 8615.50 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
8. gga-mir-3527 gga-mir-3527 2000.00 8479.82
9. RPS29 ENSGALG00000012229 1988.00 8428.94 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. RPL23A ENSGALG00000003966 1974.00 8369.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPLP0 ENSGALG00000023294 1849.00 7839.60 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. GAPDH ENSGALG00000014442 1542.00 6537.94 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPL15 ENSGALG00000011290 1501.00 6364.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. RPL35 ENSGALG00000035677 1500.00 6359.87 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
15. RPS15 ENSGALG00000015195 1468.00 6224.19 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. RPS8 ENSGALG00000010124 1434.00 6080.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. RPL19 ENSGALG00000001658 1404.00 5952.84 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
18. RPSA 1356.00 5749.32 ribosomal protein SA
19. RPL36 ENSGALG00000000474 1343.00 5694.20 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
20. RPS15A ENSGALG00000006771 1333.00 5651.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
21. RPS2 ENSGALG00000005490 1326.00 5622.12 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
22. RPS14 ENSGALG00000004588 1303.00 5524.60 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
23. MT-ATP6 MT-ATP6 1274.00 5401.65
24. RPL29 ENSGALG00000026978 1262.00 5350.77 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPL24 ENSGALG00000015339 1248.00 5291.41 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
26. MT-ND3 MT-ND3 1240.00 5257.49
27. RPS21 ENSGALG00000005338 1237.00 5244.77 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPL6 ENSGALG00000004818 1229.00 5210.85 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
29. RPL7A ENSGALG00000003197 1222.00 5181.17 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL32 ENSGALG00000027142 1221.00 5176.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
31. RPL18A 1196.00 5070.93 ribosomal protein L18a
32. RPLP1 ENSGALG00000030878 1182.00 5011.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
33. RPL27A ENSGALG00000005948 1176.00 4986.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. MT-ND1 MT-ND1 1117.00 4735.98
35. RPS4 RPS4 1103.00 4676.62
36. SNRPD1 ENSGALG00000041334 1053.00 4464.63 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
37. HBZ ENSGALG00000023740 1034.00 4384.07 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
38. RPL27 ENSGALG00000002837 993.00 4210.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS23 ENSGALG00000015617 993.00 4210.23 ribosomal protein S23
40. RPL38 ENSGALG00000001465 986.00 4180.55 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. CIRBP ENSGALG00000030918 985.00 4176.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. RPL12 ENSGALG00000008806 985.00 4176.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPS12 ENSGALG00000013990 944.00 4002.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. RPL36AL ENSGALG00000004952 932.00 3951.60 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
45. RPS16 ENSGALG00000026490 925.00 3921.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. MT-ND5 MT-ND5 918.00 3892.24
47. RPL14 ENSGALG00000043379 914.00 3875.28 ribosomal protein L14
48. NME2 ENSGALG00000002932 902.00 3824.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPL7 ENSGALG00000035252 889.00 3769.28 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
50. RPS27A ENSGALG00000036790 888.00 3765.04 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. HBG1 HBG1 869.00 3684.48
52. ENO1 ENSGALG00000002377 860.00 3646.32 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
53. RPS7 ENSGALG00000016392 838.00 3553.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. RPL26 RPL26 834.00 3536.09
55. ANP32B ENSGALG00000037483 820.00 3476.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. LDHB ENSGALG00000035836 813.00 3447.05 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. RPS11 ENSGALG00000017299 808.00 3425.85 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. RPS3A ENSGALG00000010077 803.00 3404.65 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. MT-ND4 MT-ND4 802.00 3400.41
60. TCEB3 ENSGALG00000034625 794.00 3366.49 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. RPL21 ENSGALG00000027035 782.00 3315.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPS13 ENSGALG00000006096 780.00 3307.13 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
63. RPL5 ENSGALG00000005922 779.00 3302.89 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
64. PRDX1 ENSGALG00000010243 777.00 3294.41 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
65. RPS24 ENSGALG00000004871 775.00 3285.93 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. GNB2L1 ENSGALG00000000122 766.00 3247.77 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
67. RPS17 ENSGALG00000002157 745.00 3158.73 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
68. RPL37A ENSGALG00000011472 744.00 3154.49 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
69. PPIA ENSGALG00000028600 736.00 3120.57 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
70. RPL8 ENSGALG00000016232 735.00 3116.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
71. RPS25 ENSGALG00000007699 704.00 2984.90 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. TMSB4X ENSGALG00000026383 692.00 2934.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
73. RPL23 ENSGALG00000001634 675.00 2861.94 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
74. MT-CYB MT-CYB 671.00 2844.98
75. EIF5A2 ENSGALG00000009309 637.00 2700.82 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. RPS3 ENSGALG00000017330 632.00 2679.62 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. EEF1D 628.00 2662.66 eukaryotic translation elongation factor 1 delta, transcript variant X13
78. HBE 628.00 2662.66 hemoglobin subunit epsilon
79. RPS20 ENSGALG00000014432 600.00 2543.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
80. RPL10A ENSGALG00000002644 593.00 2514.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. MT-CO1 MT-CO1 591.00 2505.79
82. ATP5G3 578.00 2450.67 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. STMN1 ENSGALG00000001475 578.00 2450.67 stathmin 1 [Source:NCBI gene;Acc:396057]
84. ENSGALG00000028992 ENSGALG00000028992 576.00 2442.19
85. HMGN2 HMGN2 568.00 2408.27
86. RPS28 ENSGALG00000024398 568.00 2408.27 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
87. RPS6 ENSGALG00000015082 563.00 2387.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
88. UBB ENSGALG00000004509 551.00 2336.19 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. CRHOA CRHOA 491.00 2081.80
90. FTH FTH 457.00 1937.64
91. RAN ENSGALG00000002569 455.00 1929.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
92. DYL1 ENSGALG00000007153 448.00 1899.48 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
93. RPL37 ENSGALG00000014833 433.00 1835.88 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. RPL31 ENSGALG00000016775 430.00 1823.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. CHCHD2 ENSGALG00000002495 427.00 1810.44 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
96. TXN ENSGALG00000015704 400.00 1695.96 thioredoxin [Source:NCBI gene;Acc:396437]
97. EIF1 ENSGALG00000028517 385.00 1632.37 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
98. H3-IX H3-IX 380.00 1611.17
99. HMGN5 ENSGALG00000007131 375.00 1589.97 high mobility group nucleosome binding domain 5, transcript variant X1
100. MDK ENSGALG00000008367 373.00 1581.49 midkine [Source:NCBI gene;Acc:423196]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA