Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s2.

Sample reads: 235,547. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5586.00 23717.83
2. RPLP0 ENSGALG00000023294 3137.00 13319.52 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2537.00 10771.95 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS10 ENSGALG00000002813 2384.00 10122.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. RPL4 ENSGALG00000007711 2300.00 9765.67 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
6. gga-mir-3533 ENSGALG00000027736 2244.00 9527.89 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS15 ENSGALG00000015195 2222.00 9434.48 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPS29 ENSGALG00000012229 2118.00 8992.91 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. GAPDH ENSGALG00000014442 1978.00 8398.47 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. gga-mir-3527 gga-mir-3527 1931.00 8198.91
11. MT-ATP6 MT-ATP6 1888.00 8016.34
12. EEF1A EEF1A 1861.00 7901.70
13. RPL13 ENSGALG00000006179 1784.00 7574.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPL15 ENSGALG00000011290 1735.00 7366.71 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPS2 ENSGALG00000005490 1705.00 7239.33 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. RPS4 RPS4 1658.00 7039.77
17. RPL23A ENSGALG00000003966 1576.00 6691.60 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPS8 ENSGALG00000010124 1504.00 6385.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPSA 1462.00 6207.57 ribosomal protein SA
20. RPL19 ENSGALG00000001658 1441.00 6118.40 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPLP1 ENSGALG00000030878 1410.00 5986.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
22. RPS14 ENSGALG00000004588 1374.00 5833.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
23. MT-ND5 MT-ND5 1337.00 5676.82
24. RPS28 ENSGALG00000024398 1312.00 5570.68 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
25. RPL6 ENSGALG00000004818 1279.00 5430.56 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
26. PPIA ENSGALG00000028600 1248.00 5298.94 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. RPL27A ENSGALG00000005948 1246.00 5290.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. MT-ND1 MT-ND1 1228.00 5214.02
29. RPL35 ENSGALG00000035677 1218.00 5171.56 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. RPL24 ENSGALG00000015339 1206.00 5120.61 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPL29 ENSGALG00000026978 1145.00 4861.60 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPL7A ENSGALG00000003197 1128.00 4789.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS15A ENSGALG00000006771 1128.00 4789.42 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPS21 ENSGALG00000005338 1117.00 4742.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. SNRPD1 ENSGALG00000041334 1110.00 4713.00 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. RPL32 ENSGALG00000027142 1104.00 4687.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL18A 1058.00 4492.21 ribosomal protein L18a
38. RPL36 ENSGALG00000000474 1019.00 4326.61 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
39. RPL27 ENSGALG00000002837 977.00 4148.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL26 RPL26 950.00 4033.64
41. RPS16 ENSGALG00000026490 949.00 4029.40 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPS12 ENSGALG00000013990 946.00 4016.66 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPL8 ENSGALG00000016232 919.00 3902.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
44. RPL38 ENSGALG00000001465 914.00 3880.79 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. ANP32B ENSGALG00000037483 907.00 3851.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
46. RPS3A ENSGALG00000010077 907.00 3851.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
47. RPS7 ENSGALG00000016392 890.00 3778.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
48. RPS27A ENSGALG00000036790 880.00 3736.43 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. CIRBP ENSGALG00000030918 870.00 3693.97 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
50. MT-ND3 MT-ND3 863.00 3664.25
51. MT-ND4 MT-ND4 859.00 3647.26
52. RPL12 ENSGALG00000008806 857.00 3638.77 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
53. RPS23 ENSGALG00000015617 855.00 3630.28 ribosomal protein S23
54. RPL7 ENSGALG00000035252 854.00 3626.03 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
55. RPL36AL ENSGALG00000004952 828.00 3515.64 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. NME2 ENSGALG00000002932 820.00 3481.67 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPS11 ENSGALG00000017299 762.00 3235.41 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. GNB2L1 ENSGALG00000000122 750.00 3184.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
59. ENO1 ENSGALG00000002377 747.00 3171.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. HBZ ENSGALG00000023740 743.00 3154.73 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
61. RPL21 ENSGALG00000027035 729.00 3095.29 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL14 ENSGALG00000043379 716.00 3040.09 ribosomal protein L14
63. TCEB3 ENSGALG00000034625 716.00 3040.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. MT-ND6 MT-ND6 707.00 3001.88
65. MT-CYB MT-CYB 705.00 2993.39
66. RPL5 ENSGALG00000005922 692.00 2938.19 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. RPS25 ENSGALG00000007699 689.00 2925.45 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPS13 ENSGALG00000006096 688.00 2921.21 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. ENSGALG00000018384 ENSGALG00000018384 686.00 2912.72
70. HBG1 HBG1 686.00 2912.72
71. RPL37A ENSGALG00000011472 682.00 2895.73 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
72. EIF5A2 ENSGALG00000009309 659.00 2798.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. LDHB ENSGALG00000035836 648.00 2751.37 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
74. PKM ENSGALG00000001992 645.00 2738.63 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
75. RPS17 ENSGALG00000002157 628.00 2666.45 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
76. RPS3 ENSGALG00000017330 594.00 2522.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. ALDOC ENSGALG00000026077 587.00 2492.37 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
78. RPL10A ENSGALG00000002644 579.00 2458.40 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. MT-CO1 MT-CO1 573.00 2432.92
80. RPS20 ENSGALG00000014432 566.00 2403.20 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. PRDX1 ENSGALG00000010243 561.00 2381.97 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. RPS24 ENSGALG00000004871 561.00 2381.97 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
83. ENSGALG00000028992 ENSGALG00000028992 553.00 2348.01
84. UBB ENSGALG00000004509 553.00 2348.01 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. RPL23 ENSGALG00000001634 546.00 2318.28 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
86. MDK ENSGALG00000008367 545.00 2314.04 midkine [Source:NCBI gene;Acc:423196]
87. HMGN2 HMGN2 544.00 2309.79
88. ENSGALG00000028649 ENSGALG00000028649 503.00 2135.71
89. RPS6 ENSGALG00000015082 500.00 2122.97 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
90. TMSB4X ENSGALG00000026383 490.00 2080.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
91. FTH FTH 475.00 2016.82
92. STMN1 ENSGALG00000001475 456.00 1936.15 stathmin 1 [Source:NCBI gene;Acc:396057]
93. EEF1D 446.00 1893.69 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. RAN ENSGALG00000002569 436.00 1851.23 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. ATP5G3 435.00 1846.98 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
96. HBE 421.00 1787.54 hemoglobin subunit epsilon
97. HMGN5 ENSGALG00000007131 412.00 1749.33 high mobility group nucleosome binding domain 5, transcript variant X1
98. RPL37 ENSGALG00000014833 382.00 1621.95 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
99. RPL31 ENSGALG00000016775 379.00 1609.21 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. SLC25A6_1 ENSGALG00000016691 371.00 1575.24 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA