Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s19.

Sample reads: 235,457. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5369.00 22804.89
2. RPLP0 ENSGALG00000023294 3636.00 15443.95 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. GAPDH ENSGALG00000014442 2641.00 11217.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2528.00 10737.71 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 2328.00 9888.21 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPS15 ENSGALG00000015195 2288.00 9718.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS29 ENSGALG00000012229 2252.00 9565.39 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. gga-mir-3533 ENSGALG00000027736 2189.00 9297.80 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 2182.00 9268.07
10. RPL4 ENSGALG00000007711 2112.00 8970.74 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. EEF1A EEF1A 2050.00 8707.40
12. RPL15 ENSGALG00000011290 1855.00 7879.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPL13 ENSGALG00000006179 1808.00 7679.50 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPS2 ENSGALG00000005490 1806.00 7671.00 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. MT-ATP6 MT-ATP6 1790.00 7603.04
16. PPIA ENSGALG00000028600 1711.00 7267.49 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL23A ENSGALG00000003966 1564.00 6643.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPSA 1534.00 6515.68 ribosomal protein SA
19. MT-ND5 MT-ND5 1517.00 6443.47
20. RPS4 RPS4 1447.00 6146.15
21. RPS8 ENSGALG00000010124 1438.00 6107.92 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL19 ENSGALG00000001658 1425.00 6052.70 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL35 ENSGALG00000035677 1385.00 5882.80 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL6 ENSGALG00000004818 1337.00 5678.92 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
25. RPLP1 ENSGALG00000030878 1328.00 5640.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. RPL7A ENSGALG00000003197 1327.00 5636.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS28 ENSGALG00000024398 1316.00 5589.72 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
28. RPL32 ENSGALG00000027142 1307.00 5551.50 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
29. RPS14 ENSGALG00000004588 1272.00 5402.83 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL24 ENSGALG00000015339 1257.00 5339.12 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPS15A ENSGALG00000006771 1257.00 5339.12 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. MT-ND1 MT-ND1 1251.00 5313.64
33. HBZ ENSGALG00000023740 1232.00 5232.93 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
34. RPL29 ENSGALG00000026978 1212.00 5147.98 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPS11 ENSGALG00000017299 1197.00 5084.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPL27A ENSGALG00000005948 1163.00 4939.86 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. SNRPD1 ENSGALG00000041334 1132.00 4808.18 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
38. RPS21 ENSGALG00000005338 1126.00 4782.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. MT-ND3 MT-ND3 1102.00 4680.76
40. RPL38 ENSGALG00000001465 1096.00 4655.27 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. GNB2L1 ENSGALG00000000122 1077.00 4574.57 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPS12 ENSGALG00000013990 1055.00 4481.12 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. HBG1 HBG1 1045.00 4438.65
44. RPL18A 1035.00 4396.17 ribosomal protein L18a
45. MT-ND4 MT-ND4 1030.00 4374.94
46. RPL12 ENSGALG00000008806 1008.00 4281.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPS27A ENSGALG00000036790 944.00 4009.65 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL27 ENSGALG00000002837 943.00 4005.40 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPL21 ENSGALG00000027035 940.00 3992.66 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPL26 RPL26 913.00 3877.98
51. RPL7 ENSGALG00000035252 896.00 3805.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
52. RPL8 ENSGALG00000016232 888.00 3771.79 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. RPL36 ENSGALG00000000474 885.00 3759.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
54. RPS3A ENSGALG00000010077 862.00 3661.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
55. RPL37A ENSGALG00000011472 859.00 3648.61 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
56. RPS23 ENSGALG00000015617 852.00 3618.88 ribosomal protein S23
57. TCEB3 ENSGALG00000034625 837.00 3555.17 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
58. MT-CYB MT-CYB 829.00 3521.19
59. NME2 ENSGALG00000002932 826.00 3508.44 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPS16 ENSGALG00000026490 816.00 3465.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPS7 ENSGALG00000016392 805.00 3419.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL14 ENSGALG00000043379 767.00 3257.84 ribosomal protein L14
63. RPL36AL ENSGALG00000004952 752.00 3194.13 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. ANP32B ENSGALG00000037483 751.00 3189.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. RPL5 ENSGALG00000005922 745.00 3164.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. EEF1D 717.00 3045.47 eukaryotic translation elongation factor 1 delta, transcript variant X13
67. ENO1 ENSGALG00000002377 712.00 3024.23 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
68. RPS13 ENSGALG00000006096 693.00 2943.53 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. HBE 692.00 2939.28 hemoglobin subunit epsilon
70. PRDX1 ENSGALG00000010243 678.00 2879.81 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. CIRBP ENSGALG00000030918 676.00 2871.32 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. RPS25 ENSGALG00000007699 674.00 2862.82 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. RPS17 ENSGALG00000002157 670.00 2845.83 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. ENSGALG00000018384 ENSGALG00000018384 653.00 2773.62
75. RPS3 ENSGALG00000017330 630.00 2675.93 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. MT-CO1 MT-CO1 617.00 2620.71
77. RPL10A ENSGALG00000002644 598.00 2540.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. HMGN2 HMGN2 593.00 2518.77
79. LDHB ENSGALG00000035836 587.00 2493.29 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. RPS20 ENSGALG00000014432 584.00 2480.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. STMN1 ENSGALG00000001475 581.00 2467.80 stathmin 1 [Source:NCBI gene;Acc:396057]
82. RPL23 ENSGALG00000001634 580.00 2463.56 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
83. UBB ENSGALG00000004509 578.00 2455.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
84. RPS24 ENSGALG00000004871 574.00 2438.07 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. ENSGALG00000028992 ENSGALG00000028992 559.00 2374.36
86. MT-ND6 MT-ND6 559.00 2374.36
87. MDK ENSGALG00000008367 550.00 2336.13 midkine [Source:NCBI gene;Acc:423196]
88. RPS6 ENSGALG00000015082 546.00 2319.14 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
89. EIF5A2 ENSGALG00000009309 539.00 2289.41 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. ATP5G3 531.00 2255.43 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. FTH FTH 499.00 2119.51
92. PKM ENSGALG00000001992 485.00 2060.04 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
93. TMSB4X ENSGALG00000026383 477.00 2026.06 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
94. ATP5L ENSGALG00000006899 454.00 1928.37 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
95. CHCHD2 ENSGALG00000002495 432.00 1834.92 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
96. HMGN5 ENSGALG00000007131 428.00 1817.93 high mobility group nucleosome binding domain 5, transcript variant X1
97. RPL31 ENSGALG00000016775 428.00 1817.93 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. ZNF593 ENSGALG00000000542 428.00 1817.93 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
99. UQCRH ENSGALG00000017380 426.00 1809.44 ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
100. RPL37 ENSGALG00000014833 398.00 1690.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA