Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s18.

Sample reads: 235,507. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4478.00 19017.04
2. RPLP0 ENSGALG00000023294 3670.00 15585.65 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. GAPDH ENSGALG00000014442 2652.00 11262.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2530.00 10744.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. gga-mir-3533 ENSGALG00000027736 2479.00 10527.75 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 2386.00 10132.80
7. RPS15 ENSGALG00000015195 2356.00 10005.39 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPS29 ENSGALG00000012229 2333.00 9907.72 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPS10 ENSGALG00000002813 2255.00 9576.47 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL15 ENSGALG00000011290 2134.00 9062.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPL4 ENSGALG00000007711 2103.00 8930.96 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPS2 ENSGALG00000005490 2046.00 8688.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
13. RPL13 ENSGALG00000006179 1967.00 8353.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPL23A ENSGALG00000003966 1774.00 7533.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS4 RPS4 1653.00 7019.91
16. RPSA 1618.00 6871.28 ribosomal protein SA
17. gga-mir-3527 gga-mir-3527 1573.00 6680.17
18. RPLP1 ENSGALG00000030878 1495.00 6348.92 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
19. RPL19 ENSGALG00000001658 1482.00 6293.72 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
20. RPL35 ENSGALG00000035677 1482.00 6293.72 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. RPS8 ENSGALG00000010124 1448.00 6149.32 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPS28 ENSGALG00000024398 1414.00 6004.93 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
23. HBZ ENSGALG00000023740 1396.00 5928.49 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
24. PPIA ENSGALG00000028600 1392.00 5911.51 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. MT-ATP6 MT-ATP6 1351.00 5737.39
26. RPS14 ENSGALG00000004588 1346.00 5716.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
27. RPL7A ENSGALG00000003197 1283.00 5448.61 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPL24 ENSGALG00000015339 1280.00 5435.87 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. RPL32 ENSGALG00000027142 1272.00 5401.89 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
30. RPL27A ENSGALG00000005948 1192.00 5062.15 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPL6 ENSGALG00000004818 1161.00 4930.50 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPS15A ENSGALG00000006771 1151.00 4888.03 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. RPL29 ENSGALG00000026978 1119.00 4752.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPS21 ENSGALG00000005338 1116.00 4739.40 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. RPL12 ENSGALG00000008806 1105.00 4692.68 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
36. HBG1 HBG1 1102.00 4679.94
37. RPL18A 1098.00 4662.95 ribosomal protein L18a
38. RPL38 ENSGALG00000001465 1059.00 4497.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. MT-ND5 MT-ND5 1033.00 4386.91
40. RPL26 RPL26 1025.00 4352.94
41. RPS12 ENSGALG00000013990 1024.00 4348.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. SNRPD1 ENSGALG00000041334 1018.00 4323.21 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. GNB2L1 ENSGALG00000000122 1007.00 4276.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPL36 ENSGALG00000000474 999.00 4242.52 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS16 ENSGALG00000026490 957.00 4064.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPS7 ENSGALG00000016392 949.00 4030.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. RPS27A ENSGALG00000036790 939.00 3987.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPS11 ENSGALG00000017299 920.00 3907.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. MT-ND1 MT-ND1 912.00 3873.06
50. RPS3A ENSGALG00000010077 907.00 3851.82 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. MT-ND3 MT-ND3 900.00 3822.09
52. RPL7 ENSGALG00000035252 894.00 3796.61 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
53. RPL8 ENSGALG00000016232 893.00 3792.37 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
54. RPL27 ENSGALG00000002837 856.00 3635.24 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. MT-ND4 MT-ND4 843.00 3580.03
56. RPS23 ENSGALG00000015617 843.00 3580.03 ribosomal protein S23
57. NME2 ENSGALG00000002932 825.00 3503.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL36AL ENSGALG00000004952 814.00 3456.87 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. ANP32B ENSGALG00000037483 810.00 3439.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. RPL21 ENSGALG00000027035 791.00 3359.20 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. TCEB3 ENSGALG00000034625 773.00 3282.75 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. RPS25 ENSGALG00000007699 769.00 3265.77 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. CIRBP ENSGALG00000030918 752.00 3193.57 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPL14 ENSGALG00000043379 741.00 3146.86 ribosomal protein L14
65. RPL5 ENSGALG00000005922 735.00 3121.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. MDK ENSGALG00000008367 723.00 3070.42 midkine [Source:NCBI gene;Acc:423196]
67. ENO1 ENSGALG00000002377 722.00 3066.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
68. HBE 715.00 3036.44 hemoglobin subunit epsilon
69. RPL10A ENSGALG00000002644 699.00 2968.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
70. ALDOC ENSGALG00000026077 695.00 2951.51 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
71. RPS13 ENSGALG00000006096 684.00 2904.79 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPL23 ENSGALG00000001634 673.00 2858.08 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. RPL37A ENSGALG00000011472 655.00 2781.64 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
74. PRDX1 ENSGALG00000010243 620.00 2633.00 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. MT-CYB MT-CYB 619.00 2628.75
76. RPS20 ENSGALG00000014432 608.00 2582.04 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. RPS17 ENSGALG00000002157 602.00 2556.56 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
78. PKM ENSGALG00000001992 593.00 2518.34 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
79. RPS3 ENSGALG00000017330 579.00 2458.88 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. TMSB4X ENSGALG00000026383 574.00 2437.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
81. LDHB ENSGALG00000035836 570.00 2420.66 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
82. UBB ENSGALG00000004509 567.00 2407.92 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. STMN1 ENSGALG00000001475 564.00 2395.18 stathmin 1 [Source:NCBI gene;Acc:396057]
84. EIF5A2 ENSGALG00000009309 556.00 2361.20 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. ENSGALG00000028992 ENSGALG00000028992 555.00 2356.96
86. HMGN2 HMGN2 546.00 2318.74
87. MT-ND6 MT-ND6 526.00 2233.80
88. RPS24 ENSGALG00000004871 526.00 2233.80 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. FTH FTH 519.00 2204.07
90. RPS6 ENSGALG00000015082 514.00 2182.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
91. EEF1D 511.00 2170.10 eukaryotic translation elongation factor 1 delta, transcript variant X13
92. ATP5G3 510.00 2165.85 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. RPL37 ENSGALG00000014833 496.00 2106.40 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. ENSGALG00000028649 ENSGALG00000028649 478.00 2029.96
95. CHCHD2 ENSGALG00000002495 476.00 2021.46 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
96. MT-CO1 MT-CO1 472.00 2004.48
97. HMGN5 ENSGALG00000007131 449.00 1906.80 high mobility group nucleosome binding domain 5, transcript variant X1
98. RPL31 ENSGALG00000016775 438.00 1860.09 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. ENSGALG00000022570 ENSGALG00000022570 425.00 1804.88
100. CRHOA CRHOA 424.00 1800.63
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA