Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s17.

Sample reads: 236,189. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4892.00 20712.23
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 3041.00 12875.28 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. RPS10 ENSGALG00000002813 2826.00 11964.99 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. EEF1A EEF1A 2491.00 10546.64
5. RPS29 ENSGALG00000012229 2400.00 10161.35 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
6. RPL23A ENSGALG00000003966 2365.00 10013.17 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. gga-mir-3527 gga-mir-3527 2150.00 9102.88
8. RPL13 ENSGALG00000006179 2098.00 8882.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
9. RPS15A ENSGALG00000006771 1974.00 8357.71 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
10. RPL4 ENSGALG00000007711 1851.00 7836.94 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPL35 ENSGALG00000035677 1782.00 7544.81 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
12. RPS15 ENSGALG00000015195 1711.00 7244.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. RPL36 ENSGALG00000000474 1626.00 6884.32 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
14. RPL24 ENSGALG00000015339 1568.00 6638.75 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
15. RPS21 ENSGALG00000005338 1568.00 6638.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
16. RPL29 ENSGALG00000026978 1551.00 6566.77 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
17. RPL19 ENSGALG00000001658 1519.00 6431.29 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
18. gga-mir-3533 ENSGALG00000027736 1425.00 6033.30 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
19. RPS4 RPS4 1408.00 5961.33
20. RPL15 ENSGALG00000011290 1386.00 5868.18 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL14 ENSGALG00000043379 1353.00 5728.46 ribosomal protein L14
22. GAPDH ENSGALG00000014442 1350.00 5715.76 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. SNRPD1 ENSGALG00000041334 1340.00 5673.42 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
24. RPL27A ENSGALG00000005948 1330.00 5631.08 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPS8 ENSGALG00000010124 1327.00 5618.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
26. MT-ND3 MT-ND3 1308.00 5537.94
27. RPSA 1304.00 5521.00 ribosomal protein SA
28. RPS23 ENSGALG00000015617 1294.00 5478.66 ribosomal protein S23
29. RPS14 ENSGALG00000004588 1291.00 5465.96 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL18A 1278.00 5410.92 ribosomal protein L18a
31. RPL7A ENSGALG00000003197 1268.00 5368.58 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. HBZ ENSGALG00000023740 1220.00 5165.35 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
33. RPL36AL ENSGALG00000004952 1220.00 5165.35 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
34. RPL32 ENSGALG00000027142 1216.00 5148.42 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPS2 ENSGALG00000005490 1210.00 5123.02 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. RPL27 ENSGALG00000002837 1158.00 4902.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPL6 ENSGALG00000004818 1135.00 4805.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. RPS24 ENSGALG00000004871 1106.00 4682.69 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
39. RPL12 ENSGALG00000008806 1103.00 4669.99 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. RPLP0 ENSGALG00000023294 1103.00 4669.99 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
41. MT-ND1 MT-ND1 1067.00 4517.57
42. ENO1 ENSGALG00000002377 1060.00 4487.93 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
43. HBG1 HBG1 1047.00 4432.89
44. RPL38 ENSGALG00000001465 1038.00 4394.79 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. CIRBP ENSGALG00000030918 1025.00 4339.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
46. RPS7 ENSGALG00000016392 1021.00 4322.81 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. TCEB3 ENSGALG00000034625 1008.00 4267.77 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
48. LDHB ENSGALG00000035836 989.00 4187.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
49. RPLP1 ENSGALG00000030878 989.00 4187.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
50. RPL23 ENSGALG00000001634 982.00 4157.69 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. NME2 ENSGALG00000002932 943.00 3992.57 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. MT-ATP6 MT-ATP6 940.00 3979.86
53. RPS11 ENSGALG00000017299 937.00 3967.16 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. PRDX1 ENSGALG00000010243 914.00 3869.78 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
55. RPS12 ENSGALG00000013990 904.00 3827.44 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
56. RPS16 ENSGALG00000026490 904.00 3827.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPL21 ENSGALG00000027035 881.00 3730.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL7 ENSGALG00000035252 852.00 3607.28 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
59. RPL5 ENSGALG00000005922 842.00 3564.94 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. RPL26 RPL26 833.00 3526.84
61. MT-ND4 MT-ND4 820.00 3471.80
62. RPS17 ENSGALG00000002157 807.00 3416.76 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
63. RPS3A ENSGALG00000010077 787.00 3332.08 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
64. HBE 745.00 3154.25 hemoglobin subunit epsilon
65. RPS27A ENSGALG00000036790 738.00 3124.62 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. ANP32B ENSGALG00000037483 712.00 3014.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. MT-CYB MT-CYB 712.00 3014.53
68. RPS3 ENSGALG00000017330 703.00 2976.43 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
69. MT-ND5 MT-ND5 683.00 2891.75
70. STMN1 ENSGALG00000001475 677.00 2866.35 stathmin 1 [Source:NCBI gene;Acc:396057]
71. RPS13 ENSGALG00000006096 673.00 2849.41 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPS25 ENSGALG00000007699 667.00 2824.01 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. RPL8 ENSGALG00000016232 647.00 2739.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
74. EEF1D 634.00 2684.29 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. MT-CO1 MT-CO1 621.00 2629.25
76. PPIA ENSGALG00000028600 611.00 2586.91 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
77. EIF5A2 ENSGALG00000009309 602.00 2548.81 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
78. ENSGALG00000028992 ENSGALG00000028992 598.00 2531.87
79. ATP5G3 592.00 2506.47 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
80. TMSB4X ENSGALG00000026383 582.00 2464.13 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
81. GNB2L1 ENSGALG00000000122 579.00 2451.43 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
82. TXN ENSGALG00000015704 556.00 2354.05 thioredoxin [Source:NCBI gene;Acc:396437]
83. RPL37A ENSGALG00000011472 543.00 2299.01 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
84. CRHOA CRHOA 517.00 2188.92
85. RPL37 ENSGALG00000014833 504.00 2133.88 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
86. RPL31 ENSGALG00000016775 501.00 2121.18 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. H3-IX H3-IX 498.00 2108.48
88. CHCHD2 ENSGALG00000002495 488.00 2066.14 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
89. UBB ENSGALG00000004509 478.00 2023.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. HMGN2 HMGN2 472.00 1998.40
91. RPL10A ENSGALG00000002644 468.00 1981.46 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. RPS20 ENSGALG00000014432 465.00 1968.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. SNRPG ENSGALG00000028409 446.00 1888.32 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
94. RAN ENSGALG00000002569 442.00 1871.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. DYL1 ENSGALG00000007153 436.00 1845.98 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
96. ATP6V1G1 ENSGALG00000007190 413.00 1748.60 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
97. RPS28 ENSGALG00000024398 410.00 1735.90 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
98. SLC25A6_1 ENSGALG00000016691 403.00 1706.26 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. RPS6 ENSGALG00000015082 397.00 1680.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
100. TPT1 ENSGALG00000028872 390.00 1651.22 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA