Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s16.

Sample reads: 235,277. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6228.00 26475.09
2. RPLP0 ENSGALG00000023294 3378.00 14359.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. MT-ATP6 MT-ATP6 2415.00 10266.11
4. gga-mir-3533 ENSGALG00000027736 2163.00 9194.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS15 ENSGALG00000015195 2162.00 9190.61 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 2136.00 9080.09 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. GAPDH ENSGALG00000014442 2129.00 9050.33 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 2095.00 8905.80
9. RPL4 ENSGALG00000007711 2093.00 8897.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. RPS29 ENSGALG00000012229 2056.00 8740.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. RPS10 ENSGALG00000002813 2006.00 8527.46 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. EEF1A EEF1A 1907.00 8106.61
13. MT-ND5 MT-ND5 1801.00 7656.01
14. RPL13 ENSGALG00000006179 1716.00 7294.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. RPS2 ENSGALG00000005490 1644.00 6988.61 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. MT-ND1 MT-ND1 1626.00 6912.09
17. RPL15 ENSGALG00000011290 1563.00 6644.28 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS28 ENSGALG00000024398 1522.00 6469.99 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL23A ENSGALG00000003966 1480.00 6291.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. HBZ ENSGALG00000023740 1459.00 6202.18 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
21. RPSA 1445.00 6142.66 ribosomal protein SA
22. RPS4 RPS4 1402.00 5959.87
23. RPLP1 ENSGALG00000030878 1392.00 5917.36 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. RPS8 ENSGALG00000010124 1346.00 5721.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. PPIA ENSGALG00000028600 1330.00 5653.80 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPL35 ENSGALG00000035677 1280.00 5441.25 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. HBG1 HBG1 1216.00 5169.19
28. RPL19 ENSGALG00000001658 1206.00 5126.68 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL27A ENSGALG00000005948 1204.00 5118.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. MT-ND4 MT-ND4 1199.00 5096.92
31. RPL6 ENSGALG00000004818 1153.00 4901.38 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPS14 ENSGALG00000004588 1151.00 4892.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
33. MT-ND3 MT-ND3 1122.00 4769.60
34. SNRPD1 ENSGALG00000041334 1112.00 4727.09 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
35. RPS15A ENSGALG00000006771 1104.00 4693.08 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPL32 ENSGALG00000027142 1094.00 4650.57 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL7A ENSGALG00000003197 1082.00 4599.56 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL24 ENSGALG00000015339 1061.00 4510.29 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPL12 ENSGALG00000008806 1050.00 4463.53 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. MT-CYB MT-CYB 1034.00 4395.51
41. RPL29 ENSGALG00000026978 1026.00 4361.50 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPS12 ENSGALG00000013990 974.00 4140.45 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPL18A 955.00 4059.68 ribosomal protein L18a
44. MT-ND6 MT-ND6 937.00 3983.17
45. RPS7 ENSGALG00000016392 912.00 3876.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
46. RPS27A ENSGALG00000036790 908.00 3859.89 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPL27 ENSGALG00000002837 907.00 3855.64 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. RPS23 ENSGALG00000015617 906.00 3851.39 ribosomal protein S23
49. RPL38 ENSGALG00000001465 893.00 3796.12 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
50. ANP32B ENSGALG00000037483 882.00 3749.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
51. RPS21 ENSGALG00000005338 879.00 3736.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
52. GNB2L1 ENSGALG00000000122 872.00 3706.85 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPL26 RPL26 851.00 3617.58
54. HBE 842.00 3579.32 hemoglobin subunit epsilon
55. RPS11 ENSGALG00000017299 841.00 3575.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. RPL8 ENSGALG00000016232 819.00 3481.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
57. RPS16 ENSGALG00000026490 799.00 3396.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. RPL7 ENSGALG00000035252 782.00 3324.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
59. NME2 ENSGALG00000002932 781.00 3320.01 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. MT-CO1 MT-CO1 776.00 3298.76
61. RPL21 ENSGALG00000027035 753.00 3200.99 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPS3A ENSGALG00000010077 729.00 3098.96 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
63. CIRBP ENSGALG00000030918 723.00 3073.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPL36AL ENSGALG00000004952 722.00 3069.21 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. ENSGALG00000018384 ENSGALG00000018384 699.00 2971.43
66. RPL14 ENSGALG00000043379 696.00 2958.68 ribosomal protein L14
67. RPL5 ENSGALG00000005922 687.00 2920.42 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. RPS25 ENSGALG00000007699 675.00 2869.41 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. RPL37A ENSGALG00000011472 674.00 2865.16 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. EIF5A2 ENSGALG00000009309 641.00 2724.88 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
71. ENO1 ENSGALG00000002377 624.00 2652.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. MDK ENSGALG00000008367 624.00 2652.61 midkine [Source:NCBI gene;Acc:423196]
73. TMSB4X ENSGALG00000026383 614.00 2610.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
74. TCEB3 ENSGALG00000034625 608.00 2584.59 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. RPL10A ENSGALG00000002644 605.00 2571.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. ALDOC ENSGALG00000026077 603.00 2563.34 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
77. RPL36 ENSGALG00000000474 603.00 2563.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. ENSGALG00000028992 ENSGALG00000028992 570.00 2423.06
79. HMGN2 HMGN2 567.00 2410.30
80. ENSGALG00000028649 ENSGALG00000028649 565.00 2401.80
81. RPS13 ENSGALG00000006096 554.00 2355.04 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. UBB ENSGALG00000004509 553.00 2350.79 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. STMN1 ENSGALG00000001475 548.00 2329.54 stathmin 1 [Source:NCBI gene;Acc:396057]
84. LDHB ENSGALG00000035836 546.00 2321.03 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
85. RPS17 ENSGALG00000002157 544.00 2312.53 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
86. RPS3 ENSGALG00000017330 535.00 2274.27 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
87. PRDX1 ENSGALG00000010243 519.00 2206.26 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPS24 ENSGALG00000004871 518.00 2202.01 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. RPL23 ENSGALG00000001634 510.00 2168.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
90. PKM ENSGALG00000001992 503.00 2138.24 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
91. EEF1D 486.00 2065.98 eukaryotic translation elongation factor 1 delta, transcript variant X13
92. RPS6 ENSGALG00000015082 484.00 2057.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
93. HMGN5 ENSGALG00000007131 460.00 1955.45 high mobility group nucleosome binding domain 5, transcript variant X1
94. RPS20 ENSGALG00000014432 451.00 1917.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
95. ENSGALG00000018386 ENSGALG00000018386 420.00 1785.41
96. CRHOA CRHOA 415.00 1764.16
97. RAN ENSGALG00000002569 415.00 1764.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
98. ATP5G3 408.00 1734.40 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. RPL31 ENSGALG00000016775 408.00 1734.40 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. FTH FTH 406.00 1725.90
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA