Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s14.

Sample reads: 235,554. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5660.00 24031.73
2. RPLP0 ENSGALG00000023294 3219.00 13667.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2668.00 11328.03 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS10 ENSGALG00000002813 2501.00 10618.97 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. gga-mir-3533 ENSGALG00000027736 2321.00 9854.71 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPS29 ENSGALG00000012229 2252.00 9561.74 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. EEF1A EEF1A 2237.00 9498.05
8. RPS15 ENSGALG00000015195 2167.00 9200.84 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. gga-mir-3527 gga-mir-3527 2103.00 8929.10
10. GAPDH ENSGALG00000014442 2026.00 8602.17 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPL4 ENSGALG00000007711 2015.00 8555.46 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL23A ENSGALG00000003966 1793.00 7612.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPS4 RPS4 1777.00 7544.94
14. RPS2 ENSGALG00000005490 1632.00 6929.29 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. RPSA 1572.00 6674.54 ribosomal protein SA
16. RPL13 ENSGALG00000006179 1570.00 6666.04 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS8 ENSGALG00000010124 1539.00 6534.42 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL15 ENSGALG00000011290 1435.00 6092.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. MT-ATP6 MT-ATP6 1409.00 5982.46
20. RPL35 ENSGALG00000035677 1329.00 5642.78 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. RPS28 ENSGALG00000024398 1319.00 5600.33 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
22. RPL19 ENSGALG00000001658 1301.00 5523.90 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPLP1 ENSGALG00000030878 1296.00 5502.67 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. RPL24 ENSGALG00000015339 1283.00 5447.47 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
25. MT-ND3 MT-ND3 1263.00 5362.56
26. RPL32 ENSGALG00000027142 1260.00 5349.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. MT-ND5 MT-ND5 1248.00 5298.87
28. RPL27A ENSGALG00000005948 1228.00 5213.95 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS14 ENSGALG00000004588 1219.00 5175.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL18A 1215.00 5158.75 ribosomal protein L18a
31. PPIA ENSGALG00000028600 1194.00 5069.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
32. RPL29 ENSGALG00000026978 1175.00 4988.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPS21 ENSGALG00000005338 1154.00 4899.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPS15A ENSGALG00000006771 1116.00 4738.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPL7A ENSGALG00000003197 1106.00 4695.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. MT-ND1 MT-ND1 1103.00 4683.21
37. RPL6 ENSGALG00000004818 1093.00 4640.76 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. RPL27 ENSGALG00000002837 1050.00 4458.18 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPL36 ENSGALG00000000474 1029.00 4369.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
40. RPL14 ENSGALG00000043379 1019.00 4326.56 ribosomal protein L14
41. RPL12 ENSGALG00000008806 1011.00 4292.59 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPS11 ENSGALG00000017299 1011.00 4292.59 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. GNB2L1 ENSGALG00000000122 972.00 4127.00 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPL38 ENSGALG00000001465 966.00 4101.53 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPL26 RPL26 904.00 3838.28
46. RPS7 ENSGALG00000016392 902.00 3829.79 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. MT-ND4 MT-ND4 896.00 3804.32
48. RPL37A ENSGALG00000011472 876.00 3719.40 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
49. TCEB3 ENSGALG00000034625 857.00 3638.73 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
50. RPS16 ENSGALG00000026490 853.00 3621.74 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. SNRPD1 ENSGALG00000041334 853.00 3621.74 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. RPS12 ENSGALG00000013990 847.00 3596.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. RPS23 ENSGALG00000015617 836.00 3549.56 ribosomal protein S23
54. RPL8 ENSGALG00000016232 832.00 3532.58 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
55. RPL7 ENSGALG00000035252 800.00 3396.71 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
56. RPS27A ENSGALG00000036790 797.00 3383.97 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. RPL5 ENSGALG00000005922 778.00 3303.30 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
58. ENO1 ENSGALG00000002377 776.00 3294.81 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
59. NME2 ENSGALG00000002932 764.00 3243.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. ANP32B ENSGALG00000037483 759.00 3222.63 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. RPL21 ENSGALG00000027035 756.00 3209.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL36AL ENSGALG00000004952 754.00 3201.40 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
63. CIRBP ENSGALG00000030918 746.00 3167.43 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPS25 ENSGALG00000007699 736.00 3124.97 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
65. HBZ ENSGALG00000023740 731.00 3103.74 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
66. RPS3A ENSGALG00000010077 727.00 3086.76 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
67. MT-CYB MT-CYB 711.00 3018.83
68. LDHB ENSGALG00000035836 696.00 2955.14 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. RPL23 ENSGALG00000001634 662.00 2810.78 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPS24 ENSGALG00000004871 657.00 2789.55 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. MDK ENSGALG00000008367 646.00 2742.84 midkine [Source:NCBI gene;Acc:423196]
72. RPS17 ENSGALG00000002157 641.00 2721.61 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
73. RPS13 ENSGALG00000006096 633.00 2687.65 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. EEF1D 629.00 2670.66 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. RPS3 ENSGALG00000017330 622.00 2640.94 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. RPL10A ENSGALG00000002644 613.00 2602.73 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. PRDX1 ENSGALG00000010243 605.00 2568.76 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. TMSB4X ENSGALG00000026383 603.00 2560.27 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
79. RPS20 ENSGALG00000014432 589.00 2500.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
80. ALDOC ENSGALG00000026077 584.00 2479.60 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. STMN1 ENSGALG00000001475 564.00 2394.68 stathmin 1 [Source:NCBI gene;Acc:396057]
82. EIF5A2 ENSGALG00000009309 556.00 2360.71 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
83. RPS6 ENSGALG00000015082 536.00 2275.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
84. HMGN2 HMGN2 533.00 2263.06
85. ENSGALG00000028992 ENSGALG00000028992 526.00 2233.34
86. MT-CO1 MT-CO1 526.00 2233.34
87. HBG1 HBG1 522.00 2216.35
88. ENSGALG00000018384 ENSGALG00000018384 516.00 2190.88
89. HMGN5 ENSGALG00000007131 509.00 2161.16 high mobility group nucleosome binding domain 5, transcript variant X1
90. UBB ENSGALG00000004509 502.00 2131.44 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. RPL37 ENSGALG00000014833 469.00 1991.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
92. ENSGALG00000028649 ENSGALG00000028649 465.00 1974.34
93. ZNF593 ENSGALG00000000542 456.00 1936.12 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
94. FTH FTH 452.00 1919.14
95. PKM ENSGALG00000001992 449.00 1906.40 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. ATP5G3 421.00 1787.52 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. ENSGALG00000022570 ENSGALG00000022570 413.00 1753.55
98. MT-ND6 MT-ND6 411.00 1745.06
99. RPL31 ENSGALG00000016775 409.00 1736.57 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. HBE 404.00 1715.34 hemoglobin subunit epsilon
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA