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Experiment Chicken_E3_aorta, section s12.

Sample reads: 235,553. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5857.00 24866.48
2. RPLP0 ENSGALG00000023294 3679.00 15619.56 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPS15 ENSGALG00000015195 2617.00 11110.73 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
4. EEF1A EEF1A 2614.00 11098.00
5. RPS10 ENSGALG00000002813 2373.00 10074.81 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 2359.00 10015.37 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. gga-mir-3533 ENSGALG00000027736 2235.00 9488.91 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS29 ENSGALG00000012229 2207.00 9370.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. GAPDH ENSGALG00000014442 2197.00 9327.58 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPL4 ENSGALG00000007711 2125.00 9021.90 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPS2 ENSGALG00000005490 2004.00 8508.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
12. RPL23A ENSGALG00000003966 1989.00 8444.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPL13 ENSGALG00000006179 1929.00 8189.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. HBZ ENSGALG00000023740 1896.00 8049.66 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
15. RPS8 ENSGALG00000010124 1698.00 7209.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. RPL15 ENSGALG00000011290 1636.00 6945.80 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. gga-mir-3527 gga-mir-3527 1599.00 6788.71
18. RPS4 RPS4 1566.00 6648.61
19. RPS28 ENSGALG00000024398 1534.00 6512.75 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
20. RPSA 1490.00 6325.94 ribosomal protein SA
21. RPS14 ENSGALG00000004588 1465.00 6219.80 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
22. RPL7A ENSGALG00000003197 1358.00 5765.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL35 ENSGALG00000035677 1335.00 5667.88 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL6 ENSGALG00000004818 1319.00 5599.95 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
25. PPIA ENSGALG00000028600 1318.00 5595.70 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS15A ENSGALG00000006771 1316.00 5587.21 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. RPLP1 ENSGALG00000030878 1283.00 5447.10 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL19 ENSGALG00000001658 1256.00 5332.47 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. MT-ATP6 MT-ATP6 1242.00 5273.03
30. RPL24 ENSGALG00000015339 1237.00 5251.81 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. MT-ND3 MT-ND3 1226.00 5205.10
32. RPS21 ENSGALG00000005338 1217.00 5166.89 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. RPL18A 1212.00 5145.67 ribosomal protein L18a
34. RPL27A ENSGALG00000005948 1191.00 5056.51 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. HBG1 HBG1 1186.00 5035.28
36. RPL32 ENSGALG00000027142 1182.00 5018.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL38 ENSGALG00000001465 1093.00 4640.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. RPL12 ENSGALG00000008806 1080.00 4585.25 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPL27 ENSGALG00000002837 1070.00 4542.79 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL26 RPL26 1053.00 4470.62
41. RPL36 ENSGALG00000000474 1048.00 4449.39 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. RPL29 ENSGALG00000026978 1025.00 4351.74 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
43. SNRPD1 ENSGALG00000041334 1025.00 4351.74 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
44. RPL7 ENSGALG00000035252 986.00 4186.16 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
45. RPL8 ENSGALG00000016232 980.00 4160.69 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
46. RPS27A ENSGALG00000036790 963.00 4088.51 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. GNB2L1 ENSGALG00000000122 954.00 4050.30 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
48. RPS12 ENSGALG00000013990 939.00 3986.62 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
49. RPS7 ENSGALG00000016392 939.00 3986.62 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. RPS3A ENSGALG00000010077 933.00 3961.14 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS23 ENSGALG00000015617 926.00 3931.43 ribosomal protein S23
52. RPL14 ENSGALG00000043379 904.00 3838.02 ribosomal protein L14
53. RPS16 ENSGALG00000026490 864.00 3668.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL37A ENSGALG00000011472 862.00 3659.71 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
55. MT-ND1 MT-ND1 857.00 3638.48
56. MT-ND5 MT-ND5 846.00 3591.78
57. MDK ENSGALG00000008367 837.00 3553.57 midkine [Source:NCBI gene;Acc:423196]
58. RPS11 ENSGALG00000017299 832.00 3532.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. RPL5 ENSGALG00000005922 797.00 3383.74 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. RPL10A ENSGALG00000002644 789.00 3349.78 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
61. ANP32B ENSGALG00000037483 785.00 3332.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. HBE 784.00 3328.55 hemoglobin subunit epsilon
63. NME2 ENSGALG00000002932 770.00 3269.11 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. RPL36AL ENSGALG00000004952 767.00 3256.37 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. MT-ND4 MT-ND4 745.00 3162.97
66. RPL21 ENSGALG00000027035 737.00 3129.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. RPS25 ENSGALG00000007699 733.00 3112.02 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPS17 ENSGALG00000002157 722.00 3065.32 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
69. TCEB3 ENSGALG00000034625 705.00 2993.15 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. RPS3 ENSGALG00000017330 687.00 2916.73 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
71. CIRBP ENSGALG00000030918 683.00 2899.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. ENO1 ENSGALG00000002377 675.00 2865.78 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. RPS13 ENSGALG00000006096 658.00 2793.60 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. STMN1 ENSGALG00000001475 651.00 2763.89 stathmin 1 [Source:NCBI gene;Acc:396057]
75. RPS20 ENSGALG00000014432 621.00 2636.52 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
76. EEF1D 589.00 2500.66 eukaryotic translation elongation factor 1 delta, transcript variant X13
77. MT-CYB MT-CYB 589.00 2500.66
78. PRDX1 ENSGALG00000010243 554.00 2352.06 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. MT-ND6 MT-ND6 553.00 2347.82
80. RPS24 ENSGALG00000004871 546.00 2318.10 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
81. ENSGALG00000028992 ENSGALG00000028992 544.00 2309.61
82. LDHB ENSGALG00000035836 541.00 2296.87 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. RPL23 ENSGALG00000001634 541.00 2296.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
84. RPS6 ENSGALG00000015082 539.00 2288.38 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
85. ENSGALG00000018384 ENSGALG00000018384 529.00 2245.92
86. EIF5A2 ENSGALG00000009309 527.00 2237.43 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. UBB ENSGALG00000004509 522.00 2216.20 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
88. RPL37 ENSGALG00000014833 519.00 2203.47 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
89. ALDOC ENSGALG00000026077 516.00 2190.73 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
90. HMGN2 HMGN2 506.00 2148.27
91. PKM ENSGALG00000001992 504.00 2139.78 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
92. ZNF593 ENSGALG00000000542 492.00 2088.83 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
93. TMSB4X ENSGALG00000026383 489.00 2076.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
94. MT-CO1 MT-CO1 487.00 2067.61
95. FTH FTH 460.00 1952.98
96. RAN ENSGALG00000002569 447.00 1897.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. MMP15 ENSGALG00000038758 435.00 1846.84 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
98. CHCHD2 ENSGALG00000002495 427.00 1812.87 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
99. RPL31 ENSGALG00000016775 422.00 1791.64 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. ATP5G3 412.00 1749.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA