Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s11.

Sample reads: 235,149. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6349.00 27003.23
2. RPLP0 ENSGALG00000023294 3682.00 15660.09 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPS15 ENSGALG00000015195 2812.00 11959.85 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2524.00 10734.94 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 2387.00 10152.26 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPS29 ENSGALG00000012229 2242.00 9535.56 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. GAPDH ENSGALG00000014442 2107.00 8961.38 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 2098.00 8923.10
9. gga-mir-3533 ENSGALG00000027736 2078.00 8838.04 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ATP6 MT-ATP6 2059.00 8757.23
11. RPL4 ENSGALG00000007711 2042.00 8684.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL13 ENSGALG00000006179 1963.00 8348.93 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. RPS2 ENSGALG00000005490 1895.00 8059.71 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
14. RPL23A ENSGALG00000003966 1746.00 7426.00 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS4 RPS4 1735.00 7379.21
16. RPS28 ENSGALG00000024398 1725.00 7336.68 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
17. EEF1A EEF1A 1544.00 6566.86
18. RPS8 ENSGALG00000010124 1521.00 6469.04 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. HBZ ENSGALG00000023740 1496.00 6362.71 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
20. RPLP1 ENSGALG00000030878 1451.00 6171.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
21. RPL15 ENSGALG00000011290 1420.00 6039.47 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL35 ENSGALG00000035677 1413.00 6009.70 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPSA 1411.00 6001.19 ribosomal protein SA
24. MT-ND1 MT-ND1 1345.00 5720.48
25. RPL19 ENSGALG00000001658 1310.00 5571.62 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. RPL7A ENSGALG00000003197 1303.00 5541.85 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. PPIA ENSGALG00000028600 1289.00 5482.31 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. RPS15A ENSGALG00000006771 1283.00 5456.79 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPS14 ENSGALG00000004588 1262.00 5367.47 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. ENSGALG00000018384 ENSGALG00000018384 1258.00 5350.46
31. RPL27A ENSGALG00000005948 1223.00 5201.60 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. MT-ND5 MT-ND5 1208.00 5137.80
33. RPL6 ENSGALG00000004818 1191.00 5065.50 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
34. RPL32 ENSGALG00000027142 1189.00 5056.99 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPL24 ENSGALG00000015339 1169.00 4971.93 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
36. HBG1 HBG1 1115.00 4742.26
37. MT-ND3 MT-ND3 1104.00 4695.47
38. RPS21 ENSGALG00000005338 1104.00 4695.47 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPS12 ENSGALG00000013990 1102.00 4686.97 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPL26 RPL26 1092.00 4644.44
41. RPL29 ENSGALG00000026978 1044.00 4440.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPL12 ENSGALG00000008806 1005.00 4274.41 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPS7 ENSGALG00000016392 1002.00 4261.65 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
44. RPL18A 998.00 4244.64 ribosomal protein L18a
45. RPL38 ENSGALG00000001465 990.00 4210.62 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. SNRPD1 ENSGALG00000041334 976.00 4151.07 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
47. RPL8 ENSGALG00000016232 965.00 4104.29 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
48. MT-ND4 MT-ND4 957.00 4070.26
49. RPL27 ENSGALG00000002837 922.00 3921.40 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS16 ENSGALG00000026490 901.00 3832.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. MDK ENSGALG00000008367 892.00 3793.81 midkine [Source:NCBI gene;Acc:423196]
52. RPS27A ENSGALG00000036790 886.00 3768.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL36AL ENSGALG00000004952 884.00 3759.78 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. RPS3A ENSGALG00000010077 868.00 3691.73 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
55. GNB2L1 ENSGALG00000000122 834.00 3547.12 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPL10A ENSGALG00000002644 822.00 3496.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
57. RPL36 ENSGALG00000000474 818.00 3479.07 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. ALDOC ENSGALG00000026077 803.00 3415.28 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
59. RPL14 ENSGALG00000043379 785.00 3338.72 ribosomal protein L14
60. MT-ND6 MT-ND6 772.00 3283.43
61. TCEB3 ENSGALG00000034625 766.00 3257.91 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. NME2 ENSGALG00000002932 764.00 3249.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. RPL21 ENSGALG00000027035 762.00 3240.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. RPL5 ENSGALG00000005922 756.00 3215.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPS23 ENSGALG00000015617 745.00 3168.59 ribosomal protein S23
66. RPS11 ENSGALG00000017299 741.00 3151.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
67. RPL7 ENSGALG00000035252 729.00 3100.54 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. TMSB4X ENSGALG00000026383 714.00 3036.75 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. MT-CYB MT-CYB 712.00 3028.24
70. ANP32B ENSGALG00000037483 677.00 2879.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. CIRBP ENSGALG00000030918 666.00 2832.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. RPS13 ENSGALG00000006096 648.00 2756.04 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. HBE 641.00 2726.27 hemoglobin subunit epsilon
74. RPS25 ENSGALG00000007699 637.00 2709.25 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. ENO1 ENSGALG00000002377 625.00 2658.22 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
76. RPS17 ENSGALG00000002157 621.00 2641.20 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
77. RAN ENSGALG00000002569 598.00 2543.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
78. RPL23 ENSGALG00000001634 596.00 2534.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. LDHB ENSGALG00000035836 592.00 2517.86 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. RPS3 ENSGALG00000017330 589.00 2505.10 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
81. EIF5A2 ENSGALG00000009309 577.00 2454.07 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
82. RPL37A ENSGALG00000011472 573.00 2437.05 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
83. HMGN5 ENSGALG00000007131 554.00 2356.24 high mobility group nucleosome binding domain 5, transcript variant X1
84. RPS24 ENSGALG00000004871 554.00 2356.24 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. ENSGALG00000028992 ENSGALG00000028992 550.00 2339.23
86. STMN1 ENSGALG00000001475 540.00 2296.70 stathmin 1 [Source:NCBI gene;Acc:396057]
87. PRDX1 ENSGALG00000010243 527.00 2241.41 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. ENSGALG00000018386 ENSGALG00000018386 521.00 2215.89
89. RPS6 ENSGALG00000015082 513.00 2181.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
90. ENSGALG00000028649 ENSGALG00000028649 498.00 2118.07
91. MT-CO1 MT-CO1 498.00 2118.07
92. PKM ENSGALG00000001992 496.00 2109.56 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
93. EEF1D 494.00 2101.05 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. RPS20 ENSGALG00000014432 484.00 2058.52 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
95. UBB ENSGALG00000004509 469.00 1994.73 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
96. HMGN2 HMGN2 467.00 1986.22
97. MMP15 ENSGALG00000038758 452.00 1922.42 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
98. RPL37 ENSGALG00000014833 428.00 1820.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
99. ATP5G3 417.00 1773.56 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. FTH FTH 413.00 1756.55
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA