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Experiment Chicken_E3_aorta, section s10.

Sample reads: 235,911. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6524.00 27658.13
2. RPLP0 ENSGALG00000023294 3326.00 14100.39 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPS15 ENSGALG00000015195 2609.00 11060.71 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2537.00 10755.47 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS29 ENSGALG00000012229 2278.00 9657.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
6. RPS10 ENSGALG00000002813 2229.00 9449.72 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. MT-ATP6 MT-ATP6 2101.00 8907.07
8. RPL4 ENSGALG00000007711 2067.00 8762.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. gga-mir-3533 ENSGALG00000027736 2052.00 8699.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 2007.00 8508.56 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. EEF1A EEF1A 1971.00 8355.94
12. gga-mir-3527 gga-mir-3527 1959.00 8305.07
13. RPL13 ENSGALG00000006179 1891.00 8016.79 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPL23A ENSGALG00000003966 1751.00 7423.27 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS8 ENSGALG00000010124 1714.00 7266.41 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. RPS2 ENSGALG00000005490 1688.00 7156.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPL15 ENSGALG00000011290 1580.00 6698.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS28 ENSGALG00000024398 1569.00 6651.69 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPS4 RPS4 1560.00 6613.53
20. RPSA 1506.00 6384.60 ribosomal protein SA
21. RPS14 ENSGALG00000004588 1484.00 6291.33 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
22. RPL35 ENSGALG00000035677 1445.00 6126.00 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPL27A ENSGALG00000005948 1441.00 6109.04 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPLP1 ENSGALG00000030878 1440.00 6104.80 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPS15A ENSGALG00000006771 1353.00 5735.97 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
26. RPL6 ENSGALG00000004818 1276.00 5409.53 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
27. RPS21 ENSGALG00000005338 1271.00 5388.33 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPL19 ENSGALG00000001658 1269.00 5379.85 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. HBZ ENSGALG00000023740 1253.00 5312.02 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. PPIA ENSGALG00000028600 1249.00 5295.07 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
31. RPL29 ENSGALG00000026978 1238.00 5248.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPL7A ENSGALG00000003197 1233.00 5227.23 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. MT-ND1 MT-ND1 1231.00 5218.76
34. MT-ND3 MT-ND3 1221.00 5176.36
35. RPL26 RPL26 1205.00 5108.53
36. MT-ND5 MT-ND5 1198.00 5078.85
37. RPL24 ENSGALG00000015339 1133.00 4803.29 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
38. RPS7 ENSGALG00000016392 1112.00 4714.26 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
39. RPL32 ENSGALG00000027142 1110.00 4705.78 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL38 ENSGALG00000001465 1084.00 4595.56 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. RPL36 ENSGALG00000000474 1061.00 4498.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. RPL7 ENSGALG00000035252 1039.00 4404.78 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
43. RPL12 ENSGALG00000008806 1016.00 4307.27 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPS16 ENSGALG00000026490 1009.00 4277.60 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPL27 ENSGALG00000002837 1003.00 4252.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. MT-ND4 MT-ND4 988.00 4188.57
47. RPS12 ENSGALG00000013990 986.00 4180.09 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPL18A 965.00 4091.06 ribosomal protein L18a
49. SNRPD1 ENSGALG00000041334 928.00 3934.20 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
50. MT-ND6 MT-ND6 927.00 3929.96
51. RPL36AL ENSGALG00000004952 898.00 3807.02 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPL8 ENSGALG00000016232 895.00 3794.30 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. RPL14 ENSGALG00000043379 884.00 3747.67 ribosomal protein L14
54. RPS27A ENSGALG00000036790 880.00 3730.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. RPS23 ENSGALG00000015617 867.00 3675.60 ribosomal protein S23
56. MDK ENSGALG00000008367 857.00 3633.20 midkine [Source:NCBI gene;Acc:423196]
57. HBG1 HBG1 849.00 3599.29
58. RPS3A ENSGALG00000010077 847.00 3590.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. ENSGALG00000028992 ENSGALG00000028992 806.00 3416.99
60. RPL21 ENSGALG00000027035 801.00 3395.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. NME2 ENSGALG00000002932 798.00 3383.08 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. RPL5 ENSGALG00000005922 773.00 3277.09 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
63. MT-CYB MT-CYB 771.00 3268.61
64. RPS24 ENSGALG00000004871 741.00 3141.43 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
65. TCEB3 ENSGALG00000034625 741.00 3141.43 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
66. RPL37A ENSGALG00000011472 730.00 3094.79 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
67. GNB2L1 ENSGALG00000000122 726.00 3077.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
68. RPL10A ENSGALG00000002644 726.00 3077.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. RPS25 ENSGALG00000007699 720.00 3052.40 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. RPS11 ENSGALG00000017299 713.00 3022.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
71. PRDX1 ENSGALG00000010243 687.00 2912.50 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
72. RPS20 ENSGALG00000014432 670.00 2840.43 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. ANP32B ENSGALG00000037483 665.00 2819.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
74. RPS6 ENSGALG00000015082 655.00 2776.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
75. RPL23 ENSGALG00000001634 644.00 2730.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
76. MT-CO1 MT-CO1 640.00 2713.24
77. RPS13 ENSGALG00000006096 609.00 2581.82 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. CIRBP ENSGALG00000030918 596.00 2526.71 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. ENO1 ENSGALG00000002377 577.00 2446.16 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. RPS17 ENSGALG00000002157 568.00 2408.00 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
81. RPS3 ENSGALG00000017330 568.00 2408.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
82. STMN1 ENSGALG00000001475 568.00 2408.00 stathmin 1 [Source:NCBI gene;Acc:396057]
83. HMGN2 HMGN2 563.00 2386.81
84. HBE 551.00 2335.93 hemoglobin subunit epsilon
85. ENSGALG00000018384 ENSGALG00000018384 543.00 2302.02
86. ENSGALG00000028649 ENSGALG00000028649 543.00 2302.02
87. RPL37 ENSGALG00000014833 538.00 2280.82 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
88. TMSB4X ENSGALG00000026383 533.00 2259.62 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. EIF5A2 ENSGALG00000009309 520.00 2204.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. UBB ENSGALG00000004509 513.00 2174.83 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. LDHB ENSGALG00000035836 488.00 2068.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
92. RPL31 ENSGALG00000016775 483.00 2047.65 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
93. PKM ENSGALG00000001992 480.00 2034.93 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
94. HMGN5 ENSGALG00000007131 475.00 2013.74 high mobility group nucleosome binding domain 5, transcript variant X1
95. EEF1D 465.00 1971.34 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. RAN ENSGALG00000002569 430.00 1822.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. ATP5G3 422.00 1789.05 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
98. GPX1 ENSGALG00000028204 405.00 1716.97 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
99. FTH FTH 404.00 1712.74
100. ZNF593 ENSGALG00000000542 404.00 1712.74 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA