Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s1.

Sample reads: 235,813. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5046.00 21400.13
2. RPS10 ENSGALG00000002813 2524.00 10704.30 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2521.00 10691.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPLP0 ENSGALG00000023294 2295.00 9733.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. RPL4 ENSGALG00000007711 2260.00 9584.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
6. RPL13 ENSGALG00000006179 2216.00 9398.07 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
7. EEF1A EEF1A 2168.00 9194.51
8. RPS29 ENSGALG00000012229 2101.00 8910.36 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. gga-mir-3533 ENSGALG00000027736 2090.00 8863.71 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPS15 ENSGALG00000015195 1879.00 7968.85 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. RPL23A ENSGALG00000003966 1854.00 7862.83 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPL35 ENSGALG00000035677 1821.00 7722.88 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
13. gga-mir-3527 gga-mir-3527 1800.00 7633.81
14. RPS2 ENSGALG00000005490 1733.00 7349.67 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. RPL15 ENSGALG00000011290 1576.00 6683.83 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. GAPDH ENSGALG00000014442 1518.00 6437.85 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPL32 ENSGALG00000027142 1489.00 6314.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
18. RPS15A ENSGALG00000006771 1452.00 6157.94 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
19. RPL6 ENSGALG00000004818 1428.00 6056.16 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
20. RPL24 ENSGALG00000015339 1413.00 5992.54 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
21. RPS8 ENSGALG00000010124 1395.00 5916.21 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. MT-ATP6 MT-ATP6 1371.00 5814.42
23. RPS4 RPS4 1368.00 5801.70
24. RPL19 ENSGALG00000001658 1334.00 5657.50 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPSA 1305.00 5534.52 ribosomal protein SA
26. RPS14 ENSGALG00000004588 1299.00 5509.07 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
27. RPL27A ENSGALG00000005948 1274.00 5403.04 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS21 ENSGALG00000005338 1238.00 5250.37 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. SNRPD1 ENSGALG00000041334 1218.00 5165.55 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPL18A 1216.00 5157.07 ribosomal protein L18a
31. RPL29 ENSGALG00000026978 1176.00 4987.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPLP1 ENSGALG00000030878 1165.00 4940.77 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
33. MT-ND3 MT-ND3 1128.00 4783.86
34. RPL7A ENSGALG00000003197 1128.00 4783.86 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. MT-ND1 MT-ND1 1114.00 4724.48
36. RPL36 ENSGALG00000000474 1053.00 4465.78 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
37. RPS23 ENSGALG00000015617 1043.00 4423.37 ribosomal protein S23
38. MT-ND5 MT-ND5 1023.00 4338.55
39. CIRBP ENSGALG00000030918 1019.00 4321.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. RPS12 ENSGALG00000013990 1003.00 4253.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. RPL7 ENSGALG00000035252 1001.00 4245.25 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
42. RPS16 ENSGALG00000026490 951.00 4033.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL14 ENSGALG00000043379 936.00 3969.58 ribosomal protein L14
44. RPL36AL ENSGALG00000004952 925.00 3922.93 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
45. RPL26 RPL26 918.00 3893.25
46. RPS7 ENSGALG00000016392 913.00 3872.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. RPS27A ENSGALG00000036790 905.00 3838.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL38 ENSGALG00000001465 897.00 3804.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
49. ENO1 ENSGALG00000002377 896.00 3799.94 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
50. RPL27 ENSGALG00000002837 890.00 3774.50 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. HBZ ENSGALG00000023740 882.00 3740.57 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
52. RPL5 ENSGALG00000005922 876.00 3715.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
53. RPL12 ENSGALG00000008806 862.00 3655.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. MT-ND4 MT-ND4 851.00 3609.10
55. RPS3A ENSGALG00000010077 838.00 3553.96 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. ANP32B ENSGALG00000037483 809.00 3430.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. RPL37A ENSGALG00000011472 801.00 3397.05 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
58. RPL21 ENSGALG00000027035 793.00 3363.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPS13 ENSGALG00000006096 792.00 3358.88 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
60. LDHB ENSGALG00000035836 782.00 3316.47 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
61. NME2 ENSGALG00000002932 771.00 3269.82 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. GNB2L1 ENSGALG00000000122 753.00 3193.48 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
63. TCEB3 ENSGALG00000034625 735.00 3117.14 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. PPIA ENSGALG00000028600 734.00 3112.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
65. RPL8 ENSGALG00000016232 728.00 3087.45 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
66. RPL23 ENSGALG00000001634 721.00 3057.77 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPS28 ENSGALG00000024398 720.00 3053.53 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
68. PRDX1 ENSGALG00000010243 688.00 2917.81 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
69. RPS17 ENSGALG00000002157 688.00 2917.81 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
70. TMSB4X ENSGALG00000026383 687.00 2913.57 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
71. RPS24 ENSGALG00000004871 678.00 2875.40 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. MT-CYB MT-CYB 666.00 2824.51
73. HBG1 HBG1 632.00 2680.32
74. EIF5A2 ENSGALG00000009309 629.00 2667.59 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. RPS11 ENSGALG00000017299 627.00 2659.11 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
76. RPS25 ENSGALG00000007699 625.00 2650.63 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
77. ENSGALG00000028992 ENSGALG00000028992 606.00 2570.05
78. RPS3 ENSGALG00000017330 606.00 2570.05 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
79. RPL10A ENSGALG00000002644 590.00 2502.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. STMN1 ENSGALG00000001475 581.00 2464.03 stathmin 1 [Source:NCBI gene;Acc:396057]
81. MT-CO1 MT-CO1 566.00 2400.41
82. RPL31 ENSGALG00000016775 551.00 2336.80 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
83. RPS20 ENSGALG00000014432 519.00 2201.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
84. UBB ENSGALG00000004509 519.00 2201.08 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. PKM ENSGALG00000001992 500.00 2120.50 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
86. RPS6 ENSGALG00000015082 498.00 2112.02 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. EEF1D 496.00 2103.54 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. RAN ENSGALG00000002569 479.00 2031.44 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
89. ATP5G3 472.00 2001.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
90. FTH FTH 466.00 1976.31
91. CRHOA CRHOA 442.00 1874.53
92. RPL37 ENSGALG00000014833 442.00 1874.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. DYL1 ENSGALG00000007153 422.00 1789.71 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
94. MDK ENSGALG00000008367 420.00 1781.22 midkine [Source:NCBI gene;Acc:423196]
95. HBE 414.00 1755.78 hemoglobin subunit epsilon
96. HMGN2 HMGN2 410.00 1738.81
97. TXN ENSGALG00000015704 397.00 1683.68 thioredoxin [Source:NCBI gene;Acc:396437]
98. CCT4 ENSGALG00000008812 388.00 1645.51 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
99. HMGN5 ENSGALG00000007131 378.00 1603.10 high mobility group nucleosome binding domain 5, transcript variant X1
100. HSPA8 ENSGALG00000006512 372.00 1577.65 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA