Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s9.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6855.63 55178.21
2. MT-ATP6 MT-ATP6 5862.70 47186.51
3. MT-ND5 MT-ND5 3954.82 31830.75
4. MT-CYB MT-CYB 3293.30 26506.45
5. MT-ND4 MT-ND4 2941.10 23671.73
6. gga-mir-3527 gga-mir-3527 2318.57 18661.24
7. MT-CO1 MT-CO1 2098.93 16893.44
8. GAPDH ENSGALG00000014442 1777.92 14309.76 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. EEF1A EEF1A 1657.05 13336.93
10. MT-ND1 MT-ND1 1351.63 10878.73
11. MT-ND3 MT-ND3 1067.01 8587.93
12. gga-mir-3533 ENSGALG00000027736 946.14 7615.10 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. PPIA ENSGALG00000028600 836.97 6736.43 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 674.52 5428.94 ribosomal protein S23
15. NME2 ENSGALG00000002932 665.42 5355.70 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 630.33 5073.27 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 536.75 4320.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. ENO1 ENSGALG00000002377 463.97 3734.31 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. STMN1 ENSGALG00000001475 461.37 3713.38 stathmin 1 [Source:NCBI gene;Acc:396057]
20. RPL8 ENSGALG00000016232 441.88 3556.51 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. CRABP-I ENSGALG00000003193 430.18 3462.35 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
22. CIRBP ENSGALG00000030918 422.38 3399.57 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPS3 ENSGALG00000017330 422.38 3399.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. ATP6V0C ENSGALG00000009229 409.39 3295.02 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. RPL18A 405.49 3263.63 ribosomal protein L18a
26. EIF4G2 ENSGALG00000005587 401.59 3232.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RPS7 ENSGALG00000016392 400.29 3221.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPL15 ENSGALG00000011290 393.79 3169.46 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. ENSGALG00000002696 ENSGALG00000002696 392.49 3158.99
30. RPL26 RPL26 375.60 3023.05
31. RPL7A ENSGALG00000003197 361.30 2907.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. MT-ND2 MT-ND2 347.01 2792.94
33. RPL23 ENSGALG00000001634 336.61 2709.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. RPS27A ENSGALG00000036790 332.71 2677.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. MDK ENSGALG00000008367 327.51 2636.00 midkine [Source:NCBI gene;Acc:423196]
36. TMSB4X ENSGALG00000026383 327.51 2636.00 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. RPL7 ENSGALG00000035252 326.21 2625.53 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
38. RPL27A ENSGALG00000005948 319.71 2573.22 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPS4 RPS4 318.41 2562.75
40. LDHB ENSGALG00000035836 317.11 2552.29 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. RPL31 ENSGALG00000016775 291.12 2343.11 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPS16 ENSGALG00000026490 287.22 2311.72 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. SNRPG ENSGALG00000028409 287.22 2311.72 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
44. RPS15 ENSGALG00000015195 280.72 2259.40 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
45. RAN ENSGALG00000002569 276.82 2228.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. NDUFB9 ENSGALG00000042242 274.23 2207.17 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
47. RPS10 ENSGALG00000002813 261.23 2102.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. RPS20 ENSGALG00000014432 257.33 2071.15 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. ANP32B ENSGALG00000037483 256.03 2060.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
50. MEIS2 ENSGALG00000039118 256.03 2060.68 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
51. RPS29 ENSGALG00000012229 256.03 2060.68 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
52. HMGN5 ENSGALG00000007131 254.73 2050.22 high mobility group nucleosome binding domain 5, transcript variant X1
53. RPL32 ENSGALG00000027142 253.43 2039.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. ENSGALG00000028992 ENSGALG00000028992 250.83 2018.83
55. RPL37 ENSGALG00000014833 248.23 1997.90 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. RPS12 ENSGALG00000013990 248.23 1997.90 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. HNRNPA3 ENSGALG00000009250 246.93 1987.44 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
58. H2AFZ ENSGALG00000014023 245.63 1976.98 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. RPL21 ENSGALG00000027035 245.63 1976.98 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. HNRNPDL ENSGALG00000023199 244.33 1966.51 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
61. H3-IX H3-IX 241.73 1945.59
62. ENSGALG00000018384 ENSGALG00000018384 239.13 1924.66
63. RPL36 ENSGALG00000000474 235.24 1893.35 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
64. EEF1B2 ENSGALG00000008590 232.64 1872.43 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. RPS11 ENSGALG00000017299 232.64 1872.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
66. RPLP1 ENSGALG00000030878 228.74 1841.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. RPS8 ENSGALG00000010124 220.94 1778.26 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
68. SLC25A6_1 ENSGALG00000016691 218.34 1757.33 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
69. ENSGALG00000018386 ENSGALG00000018386 211.84 1705.01
70. IGF2BP3 ENSGALG00000010961 211.84 1705.01 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
71. TXN ENSGALG00000015704 211.84 1705.01 thioredoxin [Source:NCBI gene;Acc:396437]
72. ATP5G3 209.24 1684.09 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
73. EIF1 ENSGALG00000028517 209.24 1684.09 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
74. RPL10A ENSGALG00000002644 209.24 1684.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS14 ENSGALG00000004588 209.24 1684.09 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. RPL27 ENSGALG00000002837 207.94 1673.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
77. RPL38 ENSGALG00000001465 201.45 1621.39 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
78. ERH ENSGALG00000017384 197.55 1590.00 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. RPL35A ENSGALG00000007611, ENSGALG00000041230 197.55 1590.00 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
80. EIF5A2 ENSGALG00000009309 196.25 1579.54 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
81. MIF ENSGALG00000006326 196.25 1579.54 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
82. CRHOA CRHOA 194.95 1569.07
83. RPL29 ENSGALG00000026978 194.95 1569.07 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
84. MT-ND6 MT-ND6 189.75 1527.22
85. RPL12 ENSGALG00000008806 189.75 1527.22 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. RPL23A ENSGALG00000003966 189.75 1527.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
87. RPS24 ENSGALG00000004871 187.15 1506.30 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
88. RPSA 187.15 1506.30 ribosomal protein SA
89. HMGN2 HMGN2 184.55 1485.37
90. COX7C ENSGALG00000027963 181.95 1464.44 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
91. EIF3F ENSGALG00000005326 180.65 1453.98 eukaryotic translation initiation factor 3 subunit F
92. RPL14 ENSGALG00000043379 179.35 1443.52 ribosomal protein L14
93. SET ENSGALG00000004701 179.35 1443.52 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. FKBP4 ENSGALG00000014331 178.05 1433.05 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
95. CDK1 ENSGALG00000003085 174.15 1401.66 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
96. ENSGALG00000028649 ENSGALG00000028649 172.85 1391.20
97. KPNA2 ENSGALG00000003584 170.25 1370.27 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
98. RPS15A ENSGALG00000006771 170.25 1370.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
99. SNRPE ENSGALG00000000137 170.25 1370.27 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
100. PRTG ENSGALG00000037336 168.95 1359.81 protogenin [Source:NCBI gene;Acc:415407]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA