Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s8.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4865.28 39161.59
2. MT-CO3 MT-CO3 4619.14 37180.36
3. MT-ND5 MT-ND5 3862.27 31088.16
4. MT-CYB MT-CYB 2492.12 20059.56
5. gga-mir-3527 gga-mir-3527 2024.46 16295.27
6. MT-ND4 MT-ND4 2010.11 16179.77
7. MT-CO1 MT-CO1 1889.09 15205.65
8. GAPDH ENSGALG00000014442 1874.73 15090.07 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. EEF1A EEF1A 1581.42 12729.16
10. MT-ND1 MT-ND1 1372.20 11045.11
11. PPIA ENSGALG00000028600 1247.09 10038.07 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-ND3 MT-ND3 1128.12 9080.46
13. gga-mir-3533 ENSGALG00000027736 966.08 7776.17 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. NME2 ENSGALG00000002932 902.50 7264.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 580.47 4672.32 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 533.29 4292.56 ribosomal protein S23
17. ENO1 ENSGALG00000002377 527.14 4243.05 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS6 ENSGALG00000015082 523.04 4210.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. STMN1 ENSGALG00000001475 479.96 3863.29 stathmin 1 [Source:NCBI gene;Acc:396057]
20. CRABP-I ENSGALG00000003193 475.86 3830.29 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
21. RPL15 ENSGALG00000011290 475.86 3830.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 473.81 3813.79 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPL23 ENSGALG00000001634 463.55 3731.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
24. RPS3 ENSGALG00000017330 459.45 3698.20 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. CIRBP ENSGALG00000030918 445.09 3582.62 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPL26 RPL26 422.53 3401.03
27. ATP6V0C ENSGALG00000009229 412.28 3318.52 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPS7 ENSGALG00000016392 402.02 3235.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL7A ENSGALG00000003197 399.97 3219.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS27A ENSGALG00000036790 385.61 3103.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RPL27A ENSGALG00000005948 363.05 2922.26 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. ENSGALG00000002696 ENSGALG00000002696 358.95 2889.26
33. RPL8 ENSGALG00000016232 342.54 2757.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
34. ANP32B ENSGALG00000037483 340.49 2740.67 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
35. RPL18A 328.18 2641.58 ribosomal protein L18a
36. RPS4 RPS4 326.13 2625.08
37. ENSGALG00000018384 ENSGALG00000018384 324.08 2608.58
38. RPL7 ENSGALG00000035252 317.92 2559.00 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
39. MDK ENSGALG00000008367 301.52 2426.99 midkine [Source:NCBI gene;Acc:423196]
40. RPS16 ENSGALG00000026490 293.31 2360.91 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. MT-ND2 MT-ND2 287.16 2311.41
42. TMSB4X ENSGALG00000026383 278.95 2245.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
43. RPL31 ENSGALG00000016775 274.85 2212.32 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. SNRPG ENSGALG00000028409 272.80 2195.82 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
45. EIF1 ENSGALG00000028517 268.70 2162.82 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
46. RPS12 ENSGALG00000013990 268.70 2162.82 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. RPS10 ENSGALG00000002813 264.60 2129.82 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. RPS20 ENSGALG00000014432 264.60 2129.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. LDHB ENSGALG00000035836 260.49 2096.73 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
50. RPL21 ENSGALG00000027035 260.49 2096.73 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPS11 ENSGALG00000017299 256.39 2063.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. MEIS2 ENSGALG00000039118 252.29 2030.73 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
53. HMGN2 HMGN2 248.19 1997.73
54. FKBP4 ENSGALG00000014331 244.08 1964.65 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. MIF ENSGALG00000006326 244.08 1964.65 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
56. ATP5G3 242.03 1948.15 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
57. ENSGALG00000018386 ENSGALG00000018386 237.93 1915.14
58. H2AFZ ENSGALG00000014023 235.88 1898.64 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. RPS15A ENSGALG00000006771 235.88 1898.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 233.83 1882.14 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. RPSA 233.83 1882.14 ribosomal protein SA
62. HMGN5 ENSGALG00000007131 231.78 1865.64 high mobility group nucleosome binding domain 5, transcript variant X1
63. RPL32 ENSGALG00000027142 231.78 1865.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. SLC25A6_1 ENSGALG00000016691 231.78 1865.64 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
65. PRTG ENSGALG00000037336 223.57 1799.56 protogenin [Source:NCBI gene;Acc:415407]
66. NONO ENSGALG00000005507 219.47 1766.56 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
67. CRHOA CRHOA 217.42 1750.06
68. ERH ENSGALG00000017384 217.42 1750.06 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
69. H3-IX H3-IX 217.42 1750.06
70. ENSGALG00000028992 ENSGALG00000028992 215.37 1733.56
71. RPS29 ENSGALG00000012229 215.37 1733.56 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
72. EIF3F ENSGALG00000005326 213.32 1717.05 eukaryotic translation initiation factor 3 subunit F
73. RPL37 ENSGALG00000014833 213.32 1717.05 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
74. PNRC1 ENSGALG00000015780 211.27 1700.55 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
75. EEF1B2 ENSGALG00000008590 209.22 1684.05 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
76. RPS8 ENSGALG00000010124 205.11 1650.97 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
77. TXN ENSGALG00000015704 205.11 1650.97 thioredoxin [Source:NCBI gene;Acc:396437]
78. CRHOB CRHOB 203.06 1634.47
79. KPNA2 ENSGALG00000003584 203.06 1634.47 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
80. RPL27 ENSGALG00000002837 203.06 1634.47 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
81. RPLP1 ENSGALG00000030878 203.06 1634.47 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
82. IGF2BP3 ENSGALG00000010961 198.96 1601.47 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
83. RPL4 ENSGALG00000007711 198.96 1601.47 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
84. MT-ND6 MT-ND6 192.81 1551.97
85. RAN ENSGALG00000002569 190.75 1535.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
86. HNRNPA3 ENSGALG00000009250 188.70 1518.88 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
87. RPL3 ENSGALG00000012172 188.70 1518.88 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. RPL36 ENSGALG00000000474 188.70 1518.88 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
89. RPS14 ENSGALG00000004588 186.65 1502.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
90. PRDX1 ENSGALG00000010243 184.60 1485.88 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
91. RPL38 ENSGALG00000001465 184.60 1485.88 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. TPT1 ENSGALG00000028872 184.60 1485.88 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
93. CALM CALM 180.50 1452.88
94. HMGB1 ENSGALG00000042875 180.50 1452.88 high mobility group box 1 [Source:NCBI gene;Acc:395724]
95. NDUFB9 ENSGALG00000042242 180.50 1452.88 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
96. RPL10A ENSGALG00000002644 180.50 1452.88 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. HNRNPDL ENSGALG00000023199 178.45 1436.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
98. RPL6 ENSGALG00000004818 176.40 1419.88 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
99. EIF5A2 ENSGALG00000009309 174.35 1403.38 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
100. RPL29 ENSGALG00000026978 174.35 1403.38 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA