Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s73.

Sample reads: 124,233. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5661.86 45577.42
2. MT-ND5 MT-ND5 5313.59 42773.88
3. MT-CO3 MT-CO3 4508.55 36293.38
4. MT-ND1 MT-ND1 2178.06 17533.17
5. MT-CYB MT-CYB 2143.34 17253.68
6. GAPDH ENSGALG00000014442 2100.48 16908.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3527 gga-mir-3527 1850.94 14899.88
8. MT-ND4 MT-ND4 1707.73 13747.06
9. MT-CO1 MT-CO1 1617.68 13022.16
10. EEF1A EEF1A 1502.13 12092.00
11. gga-mir-3533 ENSGALG00000027736 1406.11 11319.05 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1375.73 11074.49
13. PPIA ENSGALG00000028600 1201.59 9672.68 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 840.30 6764.33 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 832.16 6698.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 694.92 5594.04 ribosomal protein S23
17. ENO1 ENSGALG00000002377 591.30 4759.91 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS6 ENSGALG00000015082 576.66 4642.06 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPL15 ENSGALG00000011290 506.13 4074.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. MDK ENSGALG00000008367 503.42 4052.48 midkine [Source:NCBI gene;Acc:423196]
21. RPS3 ENSGALG00000017330 496.91 4000.08 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. EIF4G2 ENSGALG00000005587 433.98 3493.50 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPL8 ENSGALG00000016232 422.05 3397.46 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPS7 ENSGALG00000016392 417.71 3362.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL23 ENSGALG00000001634 415.54 3345.06 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPL18A 409.57 3297.00 ribosomal protein L18a
27. RPL26 RPL26 400.89 3227.13
28. ENSGALG00000002696 ENSGALG00000002696 399.27 3214.08
29. STMN1 ENSGALG00000001475 397.10 3196.62 stathmin 1 [Source:NCBI gene;Acc:396057]
30. FKBP4 ENSGALG00000014331 380.82 3065.56 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
31. RPL7 ENSGALG00000035252 379.74 3056.87 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. CIRBP ENSGALG00000030918 369.97 2978.22 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. ATP6V0C ENSGALG00000009229 354.78 2855.94 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. RPL27A ENSGALG00000005948 347.73 2799.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. RPS4 RPS4 345.02 2777.38
36. RPS27A ENSGALG00000036790 342.30 2755.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPS10 ENSGALG00000002813 328.74 2646.32 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. EIF1 ENSGALG00000028517 328.20 2641.98 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
39. RPL31 ENSGALG00000016775 323.32 2602.69 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. MT-ND2 MT-ND2 306.50 2467.29
41. ENSGALG00000018386 ENSGALG00000018386 305.96 2462.95
42. RPS20 ENSGALG00000014432 300.53 2419.24 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. MIF ENSGALG00000006326 285.89 2301.39 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
44. SNRPG ENSGALG00000028409 275.04 2214.04 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
45. RPL7A ENSGALG00000003197 273.41 2200.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
46. ATP5G3 270.15 2174.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. EEF1B2 ENSGALG00000008590 262.02 2109.24 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPS12 ENSGALG00000013990 260.39 2096.11 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
49. LDHB ENSGALG00000035836 257.68 2074.30 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
50. RPS11 ENSGALG00000017299 257.68 2074.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. H3-IX H3-IX 256.59 2065.52
52. RPS16 ENSGALG00000026490 253.34 2039.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPS24 ENSGALG00000004871 244.66 1969.49 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. RPL32 ENSGALG00000027142 238.15 1917.08 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPL36 ENSGALG00000000474 237.61 1912.74 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPS29 ENSGALG00000012229 237.61 1912.74 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. CRHOA CRHOA 235.98 1899.62
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 232.72 1873.37 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. RPS8 ENSGALG00000010124 232.18 1869.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
60. RPL37 ENSGALG00000014833 231.64 1864.68 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. ENSGALG00000018384 ENSGALG00000018384 227.30 1829.74
62. EEF1D 224.04 1803.50 eukaryotic translation elongation factor 1 delta, transcript variant X13
63. TMSB4X ENSGALG00000026383 221.33 1781.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. HNRNPA3 ENSGALG00000009250 220.79 1777.34 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
65. RAN ENSGALG00000002569 220.79 1777.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
66. EIF3F ENSGALG00000005326 219.70 1768.56 eukaryotic translation initiation factor 3 subunit F
67. SLC25A6_1 ENSGALG00000016691 218.08 1755.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
68. RPL12 ENSGALG00000008806 216.45 1742.40 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
69. RPL27 ENSGALG00000002837 215.91 1738.05 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. ERH ENSGALG00000017384 215.36 1733.63 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
71. RPL21 ENSGALG00000027035 215.36 1733.63 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. ENSGALG00000028992 ENSGALG00000028992 214.82 1729.28
73. RPS15 ENSGALG00000015195 214.82 1729.28 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
74. RPLP1 ENSGALG00000030878 212.11 1707.46 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
75. RPS15A ENSGALG00000006771 211.57 1703.12 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
76. RPL38 ENSGALG00000001465 209.40 1685.65 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. RPSA 209.40 1685.65 ribosomal protein SA
78. RPS14 ENSGALG00000004588 208.85 1681.22 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
79. HNRNPDL ENSGALG00000023199 207.77 1672.53 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
80. ANP32B ENSGALG00000037483 206.68 1663.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. PGK1 ENSGALG00000007936 205.06 1650.71 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
82. RPL10A ENSGALG00000002644 204.51 1646.29 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. RPL14 ENSGALG00000043379 203.43 1637.59 ribosomal protein L14
84. BTF3L4 ENSGALG00000010570 196.38 1580.84 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. NDUFB9 ENSGALG00000042242 195.29 1572.07 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
86. RPL23A ENSGALG00000003966 194.75 1567.72 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
87. KPNA2 ENSGALG00000003584 186.61 1502.19 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
88. RPL29 ENSGALG00000026978 183.90 1480.38 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
89. RPL6 ENSGALG00000004818 183.36 1476.03 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
90. HMGN5 ENSGALG00000007131 182.82 1471.68 high mobility group nucleosome binding domain 5, transcript variant X1
91. HMGN2 HMGN2 180.10 1449.79
92. RPL4 ENSGALG00000007711 178.48 1436.75 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. COX7C ENSGALG00000027963 176.31 1419.28 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
94. MEIS2 ENSGALG00000039118 176.31 1419.28 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
95. RPL37A ENSGALG00000011472 175.22 1410.50 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
96. NONO ENSGALG00000005507 171.42 1379.91 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. TPT1 ENSGALG00000028872 170.88 1375.57 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
98. TXN ENSGALG00000015704 170.88 1375.57 thioredoxin [Source:NCBI gene;Acc:396437]
99. H2AFZ ENSGALG00000014023 168.17 1353.75 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
100. IGF2BP3 ENSGALG00000010961 165.46 1331.94 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA