Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s70.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4405.15 35459.94
2. MT-ATP6 MT-ATP6 3906.35 31444.77
3. MT-ND5 MT-ND5 3637.33 29279.25
4. gga-mir-3527 gga-mir-3527 2494.01 20075.92
5. GAPDH ENSGALG00000014442 2040.04 16421.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-CYB MT-CYB 1950.37 15699.81
7. MT-ND1 MT-ND1 1871.91 15068.23
8. MT-CO1 MT-CO1 1625.31 13083.19
9. MT-ND4 MT-ND4 1552.45 12496.69
10. EEF1A EEF1A 1434.76 11549.32
11. MT-ND3 MT-ND3 1277.83 10286.09
12. PPIA ENSGALG00000028600 1244.20 10015.38 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. gga-mir-3533 ENSGALG00000027736 919.14 7398.76 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. NME2 ENSGALG00000002932 907.93 7308.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 807.05 6496.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 717.38 5774.66 ribosomal protein S23
17. ENO1 ENSGALG00000002377 683.75 5503.95 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS3 ENSGALG00000017330 661.33 5323.48 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPS6 ENSGALG00000015082 566.06 4556.59 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL23 ENSGALG00000001634 504.41 4060.33 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
21. RPS10 ENSGALG00000002813 504.41 4060.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
22. ENSGALG00000018386 ENSGALG00000018386 487.59 3924.93
23. MT-ND2 MT-ND2 487.59 3924.93
24. RPS4 RPS4 476.38 3834.69
25. RPL7 ENSGALG00000035252 459.57 3699.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL18A 453.97 3654.30 ribosomal protein L18a
27. RPL15 ENSGALG00000011290 437.15 3518.91 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. ENSGALG00000002696 ENSGALG00000002696 431.55 3473.83
29. RPS27A ENSGALG00000036790 431.55 3473.83 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. RPL27A ENSGALG00000005948 425.94 3428.67 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. ENSGALG00000018384 ENSGALG00000018384 420.34 3383.59
32. RPL7A ENSGALG00000003197 409.13 3293.36 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS7 ENSGALG00000016392 403.53 3248.28 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
34. MDK ENSGALG00000008367 392.32 3158.04 midkine [Source:NCBI gene;Acc:423196]
35. ATP6V0C ENSGALG00000009229 375.50 3022.65 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. CIRBP ENSGALG00000030918 375.50 3022.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. FKBP4 ENSGALG00000014331 375.50 3022.65 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
38. STMN1 ENSGALG00000001475 375.50 3022.65 stathmin 1 [Source:NCBI gene;Acc:396057]
39. EIF4G2 ENSGALG00000005587 369.90 2977.57 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
40. RPL8 ENSGALG00000016232 364.29 2932.41 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. RPS16 ENSGALG00000026490 364.29 2932.41 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPL26 RPL26 358.69 2887.33
43. RPL23A ENSGALG00000003966 341.88 2752.02 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
44. EEF1B2 ENSGALG00000008590 336.27 2706.86 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RAN ENSGALG00000002569 336.27 2706.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. CRHOA CRHOA 325.06 2616.62
47. RPL37 ENSGALG00000014833 319.46 2571.54 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. H3-IX H3-IX 308.25 2481.31
49. EIF1 ENSGALG00000028517 291.43 2345.91 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. RPL27 ENSGALG00000002837 285.83 2300.83 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPS11 ENSGALG00000017299 285.83 2300.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. EEF1D 280.23 2255.75 eukaryotic translation elongation factor 1 delta, transcript variant X13
53. RPS24 ENSGALG00000004871 280.23 2255.75 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. ATP5G3 274.62 2210.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
55. MEIS2 ENSGALG00000039118 274.62 2210.60 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
56. RPS15A ENSGALG00000006771 274.62 2210.60 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
57. RPL6 ENSGALG00000004818 269.02 2165.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
58. RPS20 ENSGALG00000014432 269.02 2165.52 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
59. LDHB ENSGALG00000035836 263.41 2120.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
60. RPL14 ENSGALG00000043379 263.41 2120.36 ribosomal protein L14
61. RPL21 ENSGALG00000027035 263.41 2120.36 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL36 ENSGALG00000000474 257.81 2075.28 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. RPS29 ENSGALG00000012229 252.20 2030.12 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. RPSA 252.20 2030.12 ribosomal protein SA
65. RPL31 ENSGALG00000016775 246.60 1985.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 246.60 1985.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPS3A ENSGALG00000010077 240.99 1939.89 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. SLC25A6_1 ENSGALG00000016691 240.99 1939.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
69. RPL29 ENSGALG00000026978 235.39 1894.81 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
70. RPS12 ENSGALG00000013990 235.39 1894.81 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
71. RPS15 ENSGALG00000015195 235.39 1894.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
72. KPNA2 ENSGALG00000003584 229.79 1849.73 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
73. RPS8 ENSGALG00000010124 229.79 1849.73 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. ATP6V1G1 ENSGALG00000007190 224.18 1804.57 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
75. PGK1 ENSGALG00000007936 224.18 1804.57 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
76. RPL13 ENSGALG00000006179 224.18 1804.57 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
77. ANP32B ENSGALG00000037483 218.58 1759.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. ERH ENSGALG00000017384 218.58 1759.49 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. HMGN2 HMGN2 218.58 1759.49
80. MIF ENSGALG00000006326 218.58 1759.49 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
81. BTF3L4 ENSGALG00000010570 212.97 1714.34 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
82. TMSB4X ENSGALG00000026383 212.97 1714.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
83. IGF2BP3 ENSGALG00000010961 207.37 1669.26 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. TXN ENSGALG00000015704 207.37 1669.26 thioredoxin [Source:NCBI gene;Acc:396437]
85. RPS21 ENSGALG00000005338 201.76 1624.10 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
86. RPL10A ENSGALG00000002644 196.16 1579.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. SET ENSGALG00000004701 196.16 1579.02 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
88. EIF5A2 ENSGALG00000009309 190.55 1533.86 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. HMGN5 ENSGALG00000007131 190.55 1533.86 high mobility group nucleosome binding domain 5, transcript variant X1
90. NDUFB9 ENSGALG00000042242 190.55 1533.86 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
91. RPL32 ENSGALG00000027142 190.55 1533.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
92. RPL38 ENSGALG00000001465 190.55 1533.86 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. COX7C ENSGALG00000027963 184.95 1488.78 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
94. ENSGALG00000028992 ENSGALG00000028992 184.95 1488.78
95. HSPA8 ENSGALG00000006512 184.95 1488.78 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
96. BTF3 ENSGALG00000013512 179.34 1443.63 basic transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:1125]
97. RPS17 ENSGALG00000002157 179.34 1443.63 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
98. TPT1 ENSGALG00000028872 179.34 1443.63 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. ALDH1A2 ENSGALG00000004270 173.74 1398.55 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
100. RPS14 ENSGALG00000004588 173.74 1398.55 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA