Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s69.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4149.78 33404.86
2. MT-CO3 MT-CO3 4138.04 33310.36
3. MT-ND5 MT-ND5 3234.13 26034.07
4. GAPDH ENSGALG00000014442 1989.78 16017.31 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-CYB MT-CYB 1796.08 14458.07
6. gga-mir-3527 gga-mir-3527 1702.17 13702.11
7. MT-ND1 MT-ND1 1666.95 13418.60
8. EEF1A EEF1A 1655.22 13324.18
9. gga-mir-3533 ENSGALG00000027736 1455.65 11717.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CO1 MT-CO1 1373.48 11056.23
11. MT-ND4 MT-ND4 1373.48 11056.23
12. PPIA ENSGALG00000028600 1361.74 10961.72 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 1250.22 10064.01
14. RPL5 ENSGALG00000005922 780.65 6284.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. ENO1 ENSGALG00000002377 704.35 5669.87 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
16. NME2 ENSGALG00000002932 686.74 5528.11 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPS23 ENSGALG00000015617 686.74 5528.11 ribosomal protein S23
18. RPL15 ENSGALG00000011290 622.17 5008.34 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. ENSGALG00000002696 ENSGALG00000002696 545.87 4394.14
20. RPL18A 534.13 4299.64 ribosomal protein L18a
21. RPL7 ENSGALG00000035252 528.26 4252.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. RPL7A ENSGALG00000003197 463.70 3732.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. ENSGALG00000018386 ENSGALG00000018386 457.83 3685.44
24. EIF4G2 ENSGALG00000005587 451.96 3638.18 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPS7 ENSGALG00000016392 451.96 3638.18 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPS4 RPS4 446.09 3590.93
27. RPS6 ENSGALG00000015082 446.09 3590.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPL8 ENSGALG00000016232 434.35 3496.43 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. CIRBP ENSGALG00000030918 422.61 3401.92 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. RPS3 ENSGALG00000017330 410.87 3307.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
31. MDK ENSGALG00000008367 405.00 3260.17 midkine [Source:NCBI gene;Acc:423196]
32. RPL23 ENSGALG00000001634 405.00 3260.17 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. ATP6V0C ENSGALG00000009229 393.26 3165.66 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
34. MIF ENSGALG00000006326 369.78 2976.65 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
35. PGK1 ENSGALG00000007936 358.04 2882.15 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
36. RPL27A ENSGALG00000005948 346.30 2787.64 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS10 ENSGALG00000002813 346.30 2787.64 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS12 ENSGALG00000013990 346.30 2787.64 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
39. ENSGALG00000018384 ENSGALG00000018384 340.43 2740.39
40. RPL31 ENSGALG00000016775 316.96 2551.46 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. STMN1 ENSGALG00000001475 316.96 2551.46 stathmin 1 [Source:NCBI gene;Acc:396057]
42. ANP32B ENSGALG00000037483 311.09 2504.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
43. FKBP4 ENSGALG00000014331 311.09 2504.21 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. RPL26 RPL26 311.09 2504.21
45. ATP5G3 305.22 2456.96 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
46. RPS20 ENSGALG00000014432 305.22 2456.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
47. RPS11 ENSGALG00000017299 299.35 2409.71 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. MT-ND2 MT-ND2 293.48 2362.45
49. RPL35A ENSGALG00000007611, ENSGALG00000041230 293.48 2362.45 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
50. RPS24 ENSGALG00000004871 287.61 2315.20 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
51. RPSA 275.87 2220.70 ribosomal protein SA
52. EIF3F ENSGALG00000005326 270.00 2173.44 eukaryotic translation initiation factor 3 subunit F
53. RPL23A ENSGALG00000003966 270.00 2173.44 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
54. RPS16 ENSGALG00000026490 258.26 2078.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. EIF1 ENSGALG00000028517 252.39 2031.69 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
56. RPL4 ENSGALG00000007711 252.39 2031.69 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
57. RPS15 ENSGALG00000015195 252.39 2031.69 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. RPS29 ENSGALG00000012229 252.39 2031.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. TXN ENSGALG00000015704 252.39 2031.69 thioredoxin [Source:NCBI gene;Acc:396437]
60. MEIS2 ENSGALG00000039118 246.52 1984.43 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
61. RAN ENSGALG00000002569 246.52 1984.43 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
62. RPS14 ENSGALG00000004588 246.52 1984.43 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. CRHOA CRHOA 240.65 1937.18
64. KPNA2 ENSGALG00000003584 240.65 1937.18 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
65. RPS27A ENSGALG00000036790 240.65 1937.18 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. NDUFB9 ENSGALG00000042242 234.78 1889.93 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
67. RPL6 ENSGALG00000004818 234.78 1889.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
68. TCEB3 ENSGALG00000034625 234.78 1889.93 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. EEF1B2 ENSGALG00000008590 228.91 1842.68 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
70. RPS21 ENSGALG00000005338 228.91 1842.68 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
71. YWHAZ ENSGALG00000031387 228.91 1842.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
72. BTF3L4 ENSGALG00000010570 223.04 1795.43 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. CDC42 ENSGALG00000004796 223.04 1795.43 cell division cycle 42 [Source:NCBI gene;Acc:395917]
74. RPL10A ENSGALG00000002644 223.04 1795.43 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPL29 ENSGALG00000026978 223.04 1795.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
76. TMSB4X ENSGALG00000026383 223.04 1795.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
77. HMGN2 HMGN2 217.17 1748.17
78. RPLP1 ENSGALG00000030878 217.17 1748.17 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
79. SLC25A6_1 ENSGALG00000016691 217.17 1748.17 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
80. HMGN5 ENSGALG00000007131 211.30 1700.92 high mobility group nucleosome binding domain 5, transcript variant X1
81. RPS15A ENSGALG00000006771 211.30 1700.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. IGF2BP3 ENSGALG00000010961 205.43 1653.67 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
83. RPL27 ENSGALG00000002837 205.43 1653.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
84. RPS3A ENSGALG00000010077 205.43 1653.67 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
85. RRM1 ENSGALG00000017350 205.43 1653.67 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
86. EIF5A2 ENSGALG00000009309 199.56 1606.42 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. SNRPG ENSGALG00000028409 199.56 1606.42 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
88. COX6C ENSGALG00000035996 193.70 1559.24 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
89. GNB1 ENSGALG00000001334 193.70 1559.24 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
90. H3-IX H3-IX 193.70 1559.24
91. HSPA8 ENSGALG00000006512 193.70 1559.24 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. CDK1 ENSGALG00000003085 187.83 1511.99 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
93. HNRNPA3 ENSGALG00000009250 187.83 1511.99 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
94. RPL32 ENSGALG00000027142 187.83 1511.99 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
95. TPT1 ENSGALG00000028872 187.83 1511.99 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. RPL14 ENSGALG00000043379 181.96 1464.74 ribosomal protein L14
97. FTH FTH 176.09 1417.49
98. PRDX1 ENSGALG00000010243 176.09 1417.49 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. RBBP4 ENSGALG00000003522 176.09 1417.49 RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
100. CALM CALM 170.22 1370.24
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA