Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s68.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4616.44 37160.19
2. MT-ND5 MT-ND5 3429.17 27603.22
3. MT-ATP6 MT-ATP6 2903.63 23372.87
4. GAPDH ENSGALG00000014442 2129.95 17145.11 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-CYB MT-CYB 1986.62 15991.37
6. gga-mir-3527 gga-mir-3527 1747.74 14068.49
7. EEF1A EEF1A 1734.91 13965.22
8. MT-CO1 MT-CO1 1630.09 13121.47
9. MT-ND4 MT-ND4 1511.00 12162.85
10. MT-ND1 MT-ND1 1469.64 11829.92
11. PPIA ENSGALG00000028600 1241.46 9993.18 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. gga-mir-3533 ENSGALG00000027736 1238.61 9970.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. MT-ND3 MT-ND3 872.09 7019.92
14. NME2 ENSGALG00000002932 815.04 6560.69 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 730.19 5877.69 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. ENO1 ENSGALG00000002377 676.71 5447.20 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. RPS23 ENSGALG00000015617 658.17 5297.96 ribosomal protein S23
18. RPS3 ENSGALG00000017330 536.94 4322.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPS7 ENSGALG00000016392 511.99 4121.28 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
20. RPL15 ENSGALG00000011290 507.00 4081.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. MDK ENSGALG00000008367 496.30 3994.98 midkine [Source:NCBI gene;Acc:423196]
22. RPS6 ENSGALG00000015082 492.02 3960.53 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. EIF4G2 ENSGALG00000005587 483.46 3891.63 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. FKBP4 ENSGALG00000014331 457.08 3679.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
25. RPL23 ENSGALG00000001634 453.51 3650.54 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. RPL7 ENSGALG00000035252 444.96 3581.72 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. STMN1 ENSGALG00000001475 434.26 3495.59 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL8 ENSGALG00000016232 429.27 3455.42 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. ATP6V0C ENSGALG00000009229 428.56 3449.71 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
30. CIRBP ENSGALG00000030918 422.14 3398.03 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL18A 417.86 3363.58 ribosomal protein L18a
32. ENSGALG00000002696 ENSGALG00000002696 414.30 3334.92
33. RPL26 RPL26 404.31 3254.51
34. RPS10 ENSGALG00000002813 390.05 3139.72 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. RPL7A ENSGALG00000003197 380.78 3065.10 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPL27A ENSGALG00000005948 355.11 2858.47 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS27A ENSGALG00000036790 322.31 2594.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS4 RPS4 317.32 2554.28
39. EIF1 ENSGALG00000028517 315.89 2542.77 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
40. RPL31 ENSGALG00000016775 315.89 2542.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. MT-ND2 MT-ND2 309.47 2491.09
42. EEF1B2 ENSGALG00000008590 304.48 2450.92 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. RPS20 ENSGALG00000014432 303.06 2439.49 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. ENSGALG00000018386 ENSGALG00000018386 295.21 2376.30
45. MEIS2 ENSGALG00000039118 292.36 2353.36 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
46. ATP5G3 291.65 2347.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. MIF ENSGALG00000006326 289.51 2330.42 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
48. CRHOA CRHOA 287.37 2313.19
49. ANP32B ENSGALG00000037483 275.96 2221.35 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
50. RPS12 ENSGALG00000013990 270.25 2175.39 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. RPS16 ENSGALG00000026490 266.69 2146.73 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. ENSGALG00000018384 ENSGALG00000018384 264.55 2129.50
53. HMGN5 ENSGALG00000007131 260.27 2095.05 high mobility group nucleosome binding domain 5, transcript variant X1
54. RPL21 ENSGALG00000027035 258.13 2077.83 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RAN ENSGALG00000002569 256.71 2066.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
56. RPS24 ENSGALG00000004871 254.57 2049.17 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. RPS11 ENSGALG00000017299 250.29 2014.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. TMSB4X ENSGALG00000026383 245.30 1974.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 234.60 1888.42 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. RPL32 ENSGALG00000027142 233.89 1882.71 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. SNRPG ENSGALG00000028409 233.89 1882.71 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
62. EIF3F ENSGALG00000005326 233.17 1876.91 eukaryotic translation initiation factor 3 subunit F
63. HNRNPDL ENSGALG00000023199 232.46 1871.19 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
64. ERH ENSGALG00000017384 231.04 1859.76 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
65. NDUFB9 ENSGALG00000042242 231.04 1859.76 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
66. RPS29 ENSGALG00000012229 230.32 1853.97 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. EIF5A2 ENSGALG00000009309 229.61 1848.25 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
68. RPS3A ENSGALG00000010077 227.47 1831.03 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
69. SLC25A6_1 ENSGALG00000016691 223.91 1802.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
70. RPL27 ENSGALG00000002837 221.77 1785.15 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
71. H3-IX H3-IX 219.63 1767.92
72. LDHB ENSGALG00000035836 218.91 1762.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. RPSA 218.91 1762.12 ribosomal protein SA
74. RPL14 ENSGALG00000043379 218.20 1756.41 ribosomal protein L14
75. IGF2BP3 ENSGALG00000010961 216.06 1739.18 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
76. TXN ENSGALG00000015704 214.64 1727.75 thioredoxin [Source:NCBI gene;Acc:396437]
77. RPLP1 ENSGALG00000030878 213.92 1721.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
78. PGK1 ENSGALG00000007936 213.21 1716.24 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
79. RPL36 ENSGALG00000000474 212.50 1710.53 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
80. KPNA2 ENSGALG00000003584 211.07 1699.02 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
81. RPL23A ENSGALG00000003966 209.64 1687.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
82. RPS14 ENSGALG00000004588 208.93 1681.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
83. EEF1D 205.37 1653.13 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. HNRNPA3 ENSGALG00000009250 205.37 1653.13 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
85. TCF12 ENSGALG00000004304 204.65 1647.34 transcription factor 12 [Source:NCBI gene;Acc:396334]
86. RPS8 ENSGALG00000010124 203.23 1635.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
87. BTF3L4 ENSGALG00000010570 201.09 1618.68 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. H2AFZ ENSGALG00000014023 198.23 1595.66 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
89. HMGN2 HMGN2 196.10 1578.51
90. RPL38 ENSGALG00000001465 196.10 1578.51 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
91. RPS15A ENSGALG00000006771 196.10 1578.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
92. ENSGALG00000028992 ENSGALG00000028992 192.53 1549.78
93. RPL29 ENSGALG00000026978 189.68 1526.84 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. RPL6 ENSGALG00000004818 188.96 1521.04 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. RPL12 ENSGALG00000008806 188.25 1515.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
96. RPL10A ENSGALG00000002644 187.54 1509.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. RPL37 ENSGALG00000014833 183.26 1475.16 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. RPL3 ENSGALG00000012172 182.55 1469.44 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. TCEB3 ENSGALG00000034625 180.41 1452.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
100. RPS15 ENSGALG00000015195 179.69 1446.42 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA