Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s66.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4489.36 36138.52
2. MT-ATP6 MT-ATP6 4464.87 35941.38
3. MT-ND5 MT-ND5 4097.56 32984.60
4. GAPDH ENSGALG00000014442 1950.83 15703.82 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. gga-mir-3527 gga-mir-3527 1942.67 15638.14
6. MT-CYB MT-CYB 1893.69 15243.86
7. MT-ND1 MT-ND1 1779.42 14324.00
8. MT-ND4 MT-ND4 1730.44 13929.72
9. EEF1A EEF1A 1640.66 13207.01
10. MT-CO1 MT-CO1 1510.06 12155.71
11. gga-mir-3533 ENSGALG00000027736 1191.72 9593.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1167.23 9395.99
13. PPIA ENSGALG00000028600 1150.91 9264.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 832.57 6702.04 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 734.62 5913.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 734.62 5913.56 ribosomal protein S23
17. ENO1 ENSGALG00000002377 718.30 5782.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
18. RPS6 ENSGALG00000015082 522.40 4205.22 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. EIF4G2 ENSGALG00000005587 514.24 4139.54 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. ATP6V0C ENSGALG00000009229 465.26 3745.26 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
21. RPS3 ENSGALG00000017330 448.94 3613.88 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL15 ENSGALG00000011290 440.77 3548.12 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. MDK ENSGALG00000008367 424.45 3416.74 midkine [Source:NCBI gene;Acc:423196]
24. RPL8 ENSGALG00000016232 424.45 3416.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. ENSGALG00000018384 ENSGALG00000018384 408.12 3285.29
26. RPS27A ENSGALG00000036790 408.12 3285.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
27. RPL7 ENSGALG00000035252 399.96 3219.60 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPS7 ENSGALG00000016392 399.96 3219.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. ENSGALG00000002696 ENSGALG00000002696 391.80 3153.92
30. ENSGALG00000018386 ENSGALG00000018386 391.80 3153.92
31. RPL26 RPL26 391.80 3153.92
32. STMN1 ENSGALG00000001475 391.80 3153.92 stathmin 1 [Source:NCBI gene;Acc:396057]
33. HNRNPA3 ENSGALG00000009250 367.31 2956.78 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
34. CIRBP ENSGALG00000030918 359.15 2891.09 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. EIF1 ENSGALG00000028517 359.15 2891.09 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
36. MT-ND2 MT-ND2 359.15 2891.09
37. MEIS2 ENSGALG00000039118 350.99 2825.40 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
38. RPL23 ENSGALG00000001634 350.99 2825.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. FKBP4 ENSGALG00000014331 342.82 2759.64 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
40. RPL35A ENSGALG00000007611, ENSGALG00000041230 342.82 2759.64 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
41. RPS10 ENSGALG00000002813 342.82 2759.64 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. RPL18A 334.66 2693.95 ribosomal protein L18a
43. RPL7A ENSGALG00000003197 326.50 2628.26 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
44. MIF ENSGALG00000006326 318.34 2562.58 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
45. RPL37 ENSGALG00000014833 302.01 2431.12 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
46. RPSA 293.85 2365.44 ribosomal protein SA
47. SLC25A6_1 ENSGALG00000016691 293.85 2365.44 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. RAN ENSGALG00000002569 285.69 2299.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
49. RPL27A ENSGALG00000005948 285.69 2299.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
50. RPL21 ENSGALG00000027035 277.52 2233.98 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPL31 ENSGALG00000016775 277.52 2233.98 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
52. RPL36 ENSGALG00000000474 277.52 2233.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. RPS12 ENSGALG00000013990 277.52 2233.98 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPS4 RPS4 277.52 2233.98
55. BTF3L4 ENSGALG00000010570 269.36 2168.30 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
56. NONO ENSGALG00000005507 269.36 2168.30 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
57. RPL32 ENSGALG00000027142 269.36 2168.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPLP1 ENSGALG00000030878 269.36 2168.30 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. RPS20 ENSGALG00000014432 269.36 2168.30 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. HMGN5 ENSGALG00000007131 253.04 2036.93 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPL14 ENSGALG00000043379 253.04 2036.93 ribosomal protein L14
62. RPL6 ENSGALG00000004818 253.04 2036.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS24 ENSGALG00000004871 253.04 2036.93 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. EEF1B2 ENSGALG00000008590 244.87 1971.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. ATP5G3 236.71 1905.47 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. CRHOA CRHOA 236.71 1905.47
67. NR2F1 ENSGALG00000027907 236.71 1905.47 nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
68. RPS8 ENSGALG00000010124 236.71 1905.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. TXN ENSGALG00000015704 236.71 1905.47 thioredoxin [Source:NCBI gene;Acc:396437]
70. TCEB3 ENSGALG00000034625 228.55 1839.79 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. ERH ENSGALG00000017384 220.39 1774.10 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
72. IGF2BP3 ENSGALG00000010961 220.39 1774.10 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
73. RPS14 ENSGALG00000004588 220.39 1774.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPS15A ENSGALG00000006771 220.39 1774.10 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
75. RPS16 ENSGALG00000026490 220.39 1774.10 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
76. RPS3A ENSGALG00000010077 220.39 1774.10 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
77. ANP32B ENSGALG00000037483 212.22 1708.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. HSPE1 ENSGALG00000009070 212.22 1708.33 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
79. NDUFB9 ENSGALG00000042242 212.22 1708.33 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
80. RPL29 ENSGALG00000026978 212.22 1708.33 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
81. H3-IX H3-IX 204.06 1642.65
82. RPS11 ENSGALG00000017299 204.06 1642.65 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
83. EIF5A2 ENSGALG00000009309 195.90 1576.96 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. LDHB ENSGALG00000035836 195.90 1576.96 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
85. RPL10A ENSGALG00000002644 195.90 1576.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPL13 ENSGALG00000006179 195.90 1576.96 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
87. RPS15 ENSGALG00000015195 195.90 1576.96 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
88. SNRPG ENSGALG00000028409 195.90 1576.96 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
89. TPT1 ENSGALG00000028872 195.90 1576.96 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
90. EIF3F ENSGALG00000005326 187.74 1511.27 eukaryotic translation initiation factor 3 subunit F
91. PGK1 ENSGALG00000007936 187.74 1511.27 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
92. RPA2 187.74 1511.27 replication protein A2
93. RPL27 ENSGALG00000002837 187.74 1511.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
94. SUB1 ENSGALG00000003248 187.74 1511.27 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
95. ENSGALG00000028992 ENSGALG00000028992 179.57 1445.51
96. NDUFA11 ENSGALG00000021692 179.57 1445.51 NADH:ubiquinone oxidoreductase subunit A11
97. RPL3 ENSGALG00000012172 179.57 1445.51 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. ENSGALG00000028649 ENSGALG00000028649 171.41 1379.82
99. HMGN2 HMGN2 171.41 1379.82
100. HNRNPDL ENSGALG00000023199 171.41 1379.82 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA