Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s65.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4108.90 33072.86
2. MT-ATP6 MT-ATP6 3943.41 31740.82
3. MT-ND5 MT-ND5 3839.38 30903.47
4. GAPDH ENSGALG00000014442 2141.92 17240.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-CYB MT-CYB 1896.05 15261.45
6. EEF1A EEF1A 1711.65 13777.20
7. gga-mir-3527 gga-mir-3527 1697.46 13662.99
8. MT-ND4 MT-ND4 1456.32 11722.03
9. MT-CO1 MT-CO1 1394.85 11227.26
10. gga-mir-3533 ENSGALG00000027736 1361.75 10960.83 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. PPIA ENSGALG00000028600 1338.11 10770.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. MT-ND1 MT-ND1 1290.83 10389.99
13. MT-ND3 MT-ND3 978.76 7878.12
14. NME2 ENSGALG00000002932 912.56 7345.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 628.86 5061.74 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 624.14 5023.75 ribosomal protein S23
17. RPL15 ENSGALG00000011290 619.41 4985.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPL8 ENSGALG00000016232 600.49 4833.39 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPS6 ENSGALG00000015082 586.31 4719.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. MDK ENSGALG00000008367 572.12 4605.04 midkine [Source:NCBI gene;Acc:423196]
21. ENO1 ENSGALG00000002377 562.67 4528.97 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
22. RPL7A ENSGALG00000003197 487.02 3920.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. ENSGALG00000002696 ENSGALG00000002696 453.92 3653.64
24. EIF4G2 ENSGALG00000005587 449.19 3615.57 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPS3 ENSGALG00000017330 449.19 3615.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. RPL18A 444.46 3577.49 ribosomal protein L18a
27. RPS7 ENSGALG00000016392 439.73 3539.42 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. STMN1 ENSGALG00000001475 430.28 3463.36 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL7 ENSGALG00000035252 425.55 3425.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. ENSGALG00000018384 ENSGALG00000018384 420.82 3387.21
31. ATP6V0C ENSGALG00000009229 387.72 3120.79 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. RPL23 ENSGALG00000001634 378.26 3044.64 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. CIRBP ENSGALG00000030918 368.81 2968.58 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. RPL27A ENSGALG00000005948 368.81 2968.58 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. MT-ND2 MT-ND2 354.62 2854.36
36. RPS10 ENSGALG00000002813 354.62 2854.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. ATP5G3 349.89 2816.29 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
38. RPS27A ENSGALG00000036790 345.17 2778.30 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. ENSGALG00000018386 ENSGALG00000018386 335.71 2702.16
40. RPS20 ENSGALG00000014432 335.71 2702.16 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. ANP32B ENSGALG00000037483 330.98 2664.08 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
42. RPL26 RPL26 330.98 2664.08
43. EEF1B2 ENSGALG00000008590 316.80 2549.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS29 ENSGALG00000012229 316.80 2549.95 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPS4 RPS4 307.34 2473.80
46. RPL31 ENSGALG00000016775 293.15 2359.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. TPT1 ENSGALG00000028872 293.15 2359.59 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
48. EIF3F ENSGALG00000005326 274.24 2207.38 eukaryotic translation initiation factor 3 subunit F
49. RPS15A ENSGALG00000006771 274.24 2207.38 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. TMSB4X ENSGALG00000026383 274.24 2207.38 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
51. BTF3L4 ENSGALG00000010570 269.51 2169.31 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
52. ERH ENSGALG00000017384 264.79 2131.32 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
53. HMGN5 ENSGALG00000007131 264.79 2131.32 high mobility group nucleosome binding domain 5, transcript variant X1
54. IGF2BP3 ENSGALG00000010961 264.79 2131.32 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
55. RPS16 ENSGALG00000026490 264.79 2131.32 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 260.06 2093.24 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPSA 260.06 2093.24 ribosomal protein SA
58. CRHOA CRHOA 255.33 2055.17
59. RPS11 ENSGALG00000017299 255.33 2055.17 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. RPS12 ENSGALG00000013990 255.33 2055.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. FKBP4 ENSGALG00000014331 250.60 2017.10 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
62. RPS14 ENSGALG00000004588 250.60 2017.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. SLC25A6_1 ENSGALG00000016691 250.60 2017.10 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
64. RPS24 ENSGALG00000004871 245.87 1979.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
65. RAN ENSGALG00000002569 241.14 1940.95 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
66. RPS8 ENSGALG00000010124 236.42 1902.96 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. RPL32 ENSGALG00000027142 231.69 1864.89 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. RPL6 ENSGALG00000004818 231.69 1864.89 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPLP1 ENSGALG00000030878 231.69 1864.89 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. MEIS2 ENSGALG00000039118 226.96 1826.82 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
71. RPL14 ENSGALG00000043379 226.96 1826.82 ribosomal protein L14
72. TXN ENSGALG00000015704 226.96 1826.82 thioredoxin [Source:NCBI gene;Acc:396437]
73. RPL3 ENSGALG00000012172 222.23 1788.75 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
74. SNRPE ENSGALG00000000137 222.23 1788.75 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
75. CDK1 ENSGALG00000003085 217.50 1750.67 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
76. EEF1D 217.50 1750.67 eukaryotic translation elongation factor 1 delta, transcript variant X13
77. HMGN2 HMGN2 217.50 1750.67
78. RPL21 ENSGALG00000027035 217.50 1750.67 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
79. EIF5A2 ENSGALG00000009309 212.77 1712.60 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. RPL10A ENSGALG00000002644 208.05 1674.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. ENSGALG00000028992 ENSGALG00000028992 203.32 1636.54
82. LDHB ENSGALG00000035836 203.32 1636.54 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. MIF ENSGALG00000006326 203.32 1636.54 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
84. RPL23A ENSGALG00000003966 198.59 1598.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. SNRPG ENSGALG00000028409 198.59 1598.47 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
86. H2AFZ ENSGALG00000014023 193.86 1560.39 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
87. RPL12 ENSGALG00000008806 193.86 1560.39 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
88. RPL37 ENSGALG00000014833 193.86 1560.39 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
89. EIF1 ENSGALG00000028517 189.13 1522.32 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
90. H3-IX H3-IX 189.13 1522.32
91. RPL29 ENSGALG00000026978 189.13 1522.32 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
92. RPL36 ENSGALG00000000474 189.13 1522.32 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
93. RPL38 ENSGALG00000001465 189.13 1522.32 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. ALDH1A2 ENSGALG00000004270 184.40 1484.25 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
95. DYNLT1 ENSGALG00000019979 184.40 1484.25 dynein light chain Tctex-type 1 [Source:HGNC Symbol;Acc:HGNC:11697]
96. RPS17 ENSGALG00000002157 184.40 1484.25 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
97. RPS3A ENSGALG00000010077 184.40 1484.25 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
98. EIF4A2 ENSGALG00000008684 179.68 1446.26 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
99. RPL13 ENSGALG00000006179 179.68 1446.26 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
100. RPL4 ENSGALG00000007711 179.68 1446.26 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA