Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s63.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4641.35 37360.21
2. MT-ATP6 MT-ATP6 4521.34 36394.20
3. MT-ND5 MT-ND5 3983.62 32065.86
4. GAPDH ENSGALG00000014442 1967.93 15840.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. EEF1A EEF1A 1885.78 15179.45
6. MT-ND4 MT-ND4 1797.82 14471.42
7. MT-CYB MT-CYB 1790.24 14410.41
8. MT-ND1 MT-ND1 1778.01 14311.96
9. gga-mir-3527 gga-mir-3527 1691.79 13617.94
10. MT-CO1 MT-CO1 1593.92 12830.14
11. gga-mir-3533 ENSGALG00000027736 1429.05 11503.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. PPIA ENSGALG00000028600 1199.51 9655.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 1093.49 8801.97
14. NME2 ENSGALG00000002932 987.46 7948.49 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 699.67 5631.94 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 691.51 5566.26 midkine [Source:NCBI gene;Acc:423196]
17. RPS23 ENSGALG00000015617 623.93 5022.28 ribosomal protein S23
18. RPS6 ENSGALG00000015082 577.91 4651.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPS3 ENSGALG00000017330 525.48 4229.81 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL15 ENSGALG00000011290 499.85 4023.51 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS7 ENSGALG00000016392 488.78 3934.40 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. ENO1 ENSGALG00000002377 485.86 3910.89 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPL8 ENSGALG00000016232 474.80 3821.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ATP6V0C ENSGALG00000009229 436.93 3517.04 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. STMN1 ENSGALG00000001475 431.10 3470.11 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL23 ENSGALG00000001634 414.79 3338.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. EIF4G2 ENSGALG00000005587 410.13 3301.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPS4 RPS4 403.14 3245.05
29. RPL27A ENSGALG00000005948 395.57 3184.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL26 RPL26 394.98 3179.36
31. RPL7A ENSGALG00000003197 394.40 3174.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL7 ENSGALG00000035252 386.24 3109.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. ENSGALG00000002696 ENSGALG00000002696 380.42 3062.16
34. CIRBP ENSGALG00000030918 378.67 3048.08 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. RPS27A ENSGALG00000036790 368.77 2968.39 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL18A 354.79 2855.86 ribosomal protein L18a
37. MT-ND2 MT-ND2 344.88 2776.09
38. RPL31 ENSGALG00000016775 319.25 2569.78 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. EEF1B2 ENSGALG00000008590 316.92 2551.02 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
40. ENSGALG00000018384 ENSGALG00000018384 311.09 2504.10
41. RPS20 ENSGALG00000014432 298.28 2400.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. RPS10 ENSGALG00000002813 297.69 2396.23 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. RPL21 ENSGALG00000027035 295.36 2377.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. TMSB4X ENSGALG00000026383 293.03 2358.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. EIF1 ENSGALG00000028517 288.96 2325.96 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
46. ENSGALG00000018386 ENSGALG00000018386 284.88 2293.12
47. HBE 280.22 2255.61 hemoglobin subunit epsilon
48. RPS16 ENSGALG00000026490 278.47 2241.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. SLC25A6_1 ENSGALG00000016691 276.14 2222.77 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. RPS12 ENSGALG00000013990 272.06 2189.93 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. ANP32B ENSGALG00000037483 266.82 2147.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
52. FKBP4 ENSGALG00000014331 266.82 2147.75 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
53. RAN ENSGALG00000002569 254.58 2049.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. RPS11 ENSGALG00000017299 249.34 2007.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. RPS8 ENSGALG00000010124 245.85 1978.95 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 240.02 1932.02 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPSA 238.85 1922.61 ribosomal protein SA
58. ATP5G3 235.36 1894.51 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. ERH ENSGALG00000017384 235.36 1894.51 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
60. BTF3L4 ENSGALG00000010570 232.45 1871.09 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
61. EIF3F ENSGALG00000005326 232.45 1871.09 eukaryotic translation initiation factor 3 subunit F
62. RPL32 ENSGALG00000027142 230.70 1857.00 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
63. HMGN2 HMGN2 230.12 1852.33
64. ENSGALG00000028992 ENSGALG00000028992 229.53 1847.59
65. MIF ENSGALG00000006326 227.79 1833.58 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. CRHOA CRHOA 224.87 1810.07
67. RPL12 ENSGALG00000008806 222.54 1791.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. NONO ENSGALG00000005507 220.79 1777.23 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
69. H3-IX H3-IX 219.63 1767.90
70. MEIS2 ENSGALG00000039118 217.88 1753.81 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
71. HBZ ENSGALG00000023740 215.55 1735.05 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
72. RPS29 ENSGALG00000012229 215.55 1735.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. RPL36 ENSGALG00000000474 210.89 1697.54 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. HBG1 HBG1 209.73 1688.21
75. RPS24 ENSGALG00000004871 206.23 1660.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. SNRPG ENSGALG00000028409 206.23 1660.03 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
77. RPL37 ENSGALG00000014833 205.65 1655.36 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. RPS3A ENSGALG00000010077 205.65 1655.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
79. H2AFZ ENSGALG00000014023 204.48 1645.95 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
80. RPS14 ENSGALG00000004588 203.90 1641.28 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
81. RPS15A ENSGALG00000006771 203.90 1641.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. HNRNPDL ENSGALG00000023199 201.57 1622.52 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
83. RPLP1 ENSGALG00000030878 198.07 1594.35 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
84. C5ORF13 C5ORF13 195.74 1575.59
85. HMGN5 ENSGALG00000007131 194.58 1566.26 high mobility group nucleosome binding domain 5, transcript variant X1
86. RPL3 ENSGALG00000012172 194.00 1561.59 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. NDUFB9 ENSGALG00000042242 192.83 1552.17 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
88. TXN ENSGALG00000015704 192.83 1552.17 thioredoxin [Source:NCBI gene;Acc:396437]
89. RPL10A ENSGALG00000002644 189.34 1524.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. RPL27 ENSGALG00000002837 184.68 1486.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
91. RPS15 ENSGALG00000015195 184.68 1486.57 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
92. RPL38 ENSGALG00000001465 184.09 1481.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. TCF12 ENSGALG00000004304 182.34 1467.73 transcription factor 12 [Source:NCBI gene;Acc:396334]
94. IGF2BP3 ENSGALG00000010961 181.76 1463.06 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
95. CALM CALM 180.60 1453.73
96. ALDH1A2 ENSGALG00000004270 179.43 1444.31 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
97. EEF1D 178.85 1439.64 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. RPL29 ENSGALG00000026978 177.10 1425.55 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
99. RPL23A ENSGALG00000003966 175.94 1416.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
100. RPL4 ENSGALG00000007711 174.19 1402.13 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA