Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s6.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7104.60 57184.87
2. MT-ATP6 MT-ATP6 5820.99 46853.10
3. MT-ND5 MT-ND5 4149.32 33397.84
4. MT-ND4 MT-ND4 3104.53 24988.34
5. gga-mir-3527 gga-mir-3527 2447.80 19702.32
6. MT-CO1 MT-CO1 2298.55 18501.01
7. MT-CYB MT-CYB 2149.29 17299.62
8. MT-ND3 MT-ND3 2059.74 16578.83
9. MT-ND1 MT-ND1 1522.41 12253.87
10. GAPDH ENSGALG00000014442 1492.56 12013.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. PPIA ENSGALG00000028600 1253.75 10091.42 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. EEF1A EEF1A 1164.20 9370.64
13. gga-mir-3533 ENSGALG00000027736 805.98 6487.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPL23 ENSGALG00000001634 746.28 6006.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
15. STMN1 ENSGALG00000001475 656.73 5286.01 stathmin 1 [Source:NCBI gene;Acc:396057]
16. H2AFZ ENSGALG00000014023 626.88 5045.75 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
17. RPS23 ENSGALG00000015617 626.88 5045.75 ribosomal protein S23
18. RPL15 ENSGALG00000011290 597.03 4805.49 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS27A ENSGALG00000036790 537.32 4324.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
20. RPS6 ENSGALG00000015082 537.32 4324.88 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. NME2 ENSGALG00000002932 507.47 4084.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
22. RPL37 ENSGALG00000014833 507.47 4084.62 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
23. ATP6V0C ENSGALG00000009229 477.62 3844.36 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPL5 ENSGALG00000005922 477.62 3844.36 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
25. RPL8 ENSGALG00000016232 477.62 3844.36 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPS10 ENSGALG00000002813 477.62 3844.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
27. RPS3 ENSGALG00000017330 477.62 3844.36 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
28. CIRBP ENSGALG00000030918 447.77 3604.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. ENO1 ENSGALG00000002377 447.77 3604.10 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPS16 ENSGALG00000026490 447.77 3604.10 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
31. ANP32B ENSGALG00000037483 417.92 3363.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
32. CRABP-I ENSGALG00000003193 417.92 3363.83 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
33. CRHOB CRHOB 417.92 3363.83
34. RPS20 ENSGALG00000014432 417.92 3363.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
35. HMGN5 ENSGALG00000007131 388.07 3123.57 high mobility group nucleosome binding domain 5, transcript variant X1
36. RPL18A 388.07 3123.57 ribosomal protein L18a
37. RPS15 ENSGALG00000015195 358.22 2883.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
38. RPS29 ENSGALG00000012229 358.22 2883.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
39. RPS4 RPS4 358.22 2883.31
40. ENSGALG00000018386 ENSGALG00000018386 328.36 2642.97
41. RPL7A ENSGALG00000003197 328.36 2642.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. ATP5G3 298.51 2402.70 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. EIF4G2 ENSGALG00000005587 298.51 2402.70 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
44. FKBP4 ENSGALG00000014331 298.51 2402.70 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. PRTG ENSGALG00000037336 298.51 2402.70 protogenin [Source:NCBI gene;Acc:415407]
46. RPL21 ENSGALG00000027035 298.51 2402.70 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPL23A ENSGALG00000003966 298.51 2402.70 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
48. RPL26 RPL26 298.51 2402.70
49. RPS7 ENSGALG00000016392 298.51 2402.70 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. SLC25A6_1 ENSGALG00000016691 298.51 2402.70 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. ENSGALG00000002696 ENSGALG00000002696 268.66 2162.44
52. ENSGALG00000028992 ENSGALG00000028992 268.66 2162.44
53. RBBP4 ENSGALG00000003522 268.66 2162.44 RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
54. RPL12 ENSGALG00000008806 268.66 2162.44 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
55. RPL36 ENSGALG00000000474 268.66 2162.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPL36AL ENSGALG00000004952 268.66 2162.44 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. RPL38 ENSGALG00000001465 268.66 2162.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
58. RPS11 ENSGALG00000017299 268.66 2162.44 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. SNRPD1 ENSGALG00000041334 268.66 2162.44 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
60. ATP6V1G1 ENSGALG00000007190 238.81 1922.18 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
61. CDC42 ENSGALG00000004796 238.81 1922.18 cell division cycle 42 [Source:NCBI gene;Acc:395917]
62. CNN3 ENSGALG00000005597 238.81 1922.18 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
63. COX7C ENSGALG00000027963 238.81 1922.18 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
64. DYL1 ENSGALG00000007153 238.81 1922.18 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
65. EIF4A3 ENSGALG00000008530 238.81 1922.18 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
66. HOXA4 ENSGALG00000022622 238.81 1922.18 homeobox A4 [Source:NCBI gene;Acc:395307]
67. LDHB ENSGALG00000035836 238.81 1922.18 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
68. RPL27A ENSGALG00000005948 238.81 1922.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
69. RPL29 ENSGALG00000026978 238.81 1922.18 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
70. RPL7 ENSGALG00000035252 238.81 1922.18 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
71. RPS12 ENSGALG00000013990 238.81 1922.18 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
72. RPS14 ENSGALG00000004588 238.81 1922.18 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. RPS3A ENSGALG00000010077 238.81 1922.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
74. RPSA 238.81 1922.18 ribosomal protein SA
75. RRM1 ENSGALG00000017350 238.81 1922.18 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
76. SNRPE ENSGALG00000000137 238.81 1922.18 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. ATP5F1 208.96 1681.92 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
78. BTF3L4 ENSGALG00000010570 208.96 1681.92 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. CDK1 ENSGALG00000003085 208.96 1681.92 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
80. COX6A1 ENSGALG00000007205 208.96 1681.92 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
81. CRHOA CRHOA 208.96 1681.92
82. EEF1D 208.96 1681.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. EIF1 ENSGALG00000028517 208.96 1681.92 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
84. EIF3F ENSGALG00000005326 208.96 1681.92 eukaryotic translation initiation factor 3 subunit F
85. ENSGALG00000018384 ENSGALG00000018384 208.96 1681.92
86. HMGB2 ENSGALG00000010745 208.96 1681.92 high mobility group box 2 [Source:NCBI gene;Acc:396482]
87. HMGN2 HMGN2 208.96 1681.92
88. HNRNPA2B1 ENSGALG00000011036 208.96 1681.92 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
89. HSPA8 ENSGALG00000006512 208.96 1681.92 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
90. IGF2BP3 ENSGALG00000010961 208.96 1681.92 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
91. RPL27 ENSGALG00000002837 208.96 1681.92 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
92. RPL3 ENSGALG00000012172 208.96 1681.92 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. RPL35A ENSGALG00000007611, ENSGALG00000041230 208.96 1681.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
94. RPL37A ENSGALG00000011472 208.96 1681.92 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
95. RPL4 ENSGALG00000007711 208.96 1681.92 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
96. RPS24 ENSGALG00000004871 208.96 1681.92 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
97. TALDO1 ENSGALG00000037195 208.96 1681.92 transaldolase 1 [Source:NCBI gene;Acc:423019]
98. TMSB4X ENSGALG00000026383 208.96 1681.92 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
99. TRAPPC2L ENSGALG00000006250 208.96 1681.92 trafficking protein particle complex 2 like [Source:HGNC Symbol;Acc:HGNC:30887]
100. COX6C ENSGALG00000035996 179.11 1441.65 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA