Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s57.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4729.04 38065.86
2. MT-ATP6 MT-ATP6 4312.31 34711.44
3. MT-ND5 MT-ND5 4277.36 34430.11
4. MT-CYB MT-CYB 2347.48 18895.77
5. MT-ND4 MT-ND4 2015.50 16223.53
6. gga-mir-3527 gga-mir-3527 1853.87 14922.51
7. gga-mir-3533 ENSGALG00000027736 1721.95 13860.64 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. EEF1A EEF1A 1660.80 13368.42
9. MT-CO1 MT-CO1 1604.01 12911.29
10. MT-ND3 MT-ND3 1458.99 11743.97
11. MT-ND1 MT-ND1 1382.10 11125.05
12. GAPDH ENSGALG00000014442 1371.62 11040.70 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1259.79 10140.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 1007.31 8108.22 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 724.25 5829.77 midkine [Source:NCBI gene;Acc:423196]
16. RPL5 ENSGALG00000005922 719.88 5794.59 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS23 ENSGALG00000015617 514.58 4142.05 ribosomal protein S23
18. RPL15 ENSGALG00000011290 483.13 3888.90 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. EIF4G2 ENSGALG00000005587 459.54 3699.01 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPS6 ENSGALG00000015082 459.54 3699.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. RPS3 ENSGALG00000017330 435.07 3502.05 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL8 ENSGALG00000016232 434.20 3495.04 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. ATP6V0C ENSGALG00000009229 432.45 3480.96 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPS7 ENSGALG00000016392 396.63 3192.63 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. STMN1 ENSGALG00000001475 380.91 3066.09 stathmin 1 [Source:NCBI gene;Acc:396057]
26. ENO1 ENSGALG00000002377 375.67 3023.91 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPL7A ENSGALG00000003197 375.67 3023.91 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. CIRBP ENSGALG00000030918 352.08 2834.03 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. RPL7 ENSGALG00000035252 351.20 2826.94 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. ENSGALG00000002696 ENSGALG00000002696 348.58 2805.85
31. RPL23 ENSGALG00000001634 346.84 2791.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL26 RPL26 339.85 2735.58
33. TMSB4X ENSGALG00000026383 338.97 2728.50 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPL18A 332.86 2679.32 ribosomal protein L18a
35. RPS10 ENSGALG00000002813 325.00 2616.05 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. RPL27A ENSGALG00000005948 316.26 2545.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. HBE 310.14 2496.44 hemoglobin subunit epsilon
38. ATP5G3 309.27 2489.43 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
39. RPS20 ENSGALG00000014432 305.78 2461.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPS27A ENSGALG00000036790 297.91 2397.99 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. MT-ND2 MT-ND2 290.05 2334.72
42. NDUFB9 ENSGALG00000042242 284.81 2292.55 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
43. ALDH1A2 ENSGALG00000004270 282.19 2271.46 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
44. FKBP4 ENSGALG00000014331 282.19 2271.46 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. RPL35A ENSGALG00000007611, ENSGALG00000041230 275.20 2215.19 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
46. RPS16 ENSGALG00000026490 275.20 2215.19 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPL21 ENSGALG00000027035 268.21 2158.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. SNRPG ENSGALG00000028409 264.71 2130.75 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. CRHOA CRHOA 263.84 2123.75
50. RPL31 ENSGALG00000016775 255.10 2053.40 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
51. ENSGALG00000028992 ENSGALG00000028992 249.86 2011.22
52. RAN ENSGALG00000002569 248.99 2004.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
53. RPS12 ENSGALG00000013990 247.24 1990.13 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. EIF1 ENSGALG00000028517 242.87 1954.95 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
55. ANP32B ENSGALG00000037483 242.00 1947.95 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. ENSGALG00000018384 ENSGALG00000018384 239.38 1926.86
57. MEIS2 ENSGALG00000039118 237.63 1912.78 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
58. RPS4 RPS4 237.63 1912.78
59. TXN ENSGALG00000015704 237.63 1912.78 thioredoxin [Source:NCBI gene;Acc:396437]
60. EEF1B2 ENSGALG00000008590 235.88 1898.69 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. ENSGALG00000018386 ENSGALG00000018386 227.15 1828.42
62. ERH ENSGALG00000017384 227.15 1828.42 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
63. RPS24 ENSGALG00000004871 226.27 1821.33 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. RPL38 ENSGALG00000001465 223.65 1800.24 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
65. SLC25A6_1 ENSGALG00000016691 223.65 1800.24 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
66. HBG1 HBG1 222.78 1793.24
67. HMGN5 ENSGALG00000007131 222.78 1793.24 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPL10A ENSGALG00000002644 221.03 1779.16 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. RPL32 ENSGALG00000027142 218.41 1758.07 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
70. BTF3L4 ENSGALG00000010570 217.54 1751.06 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
71. H3-IX H3-IX 217.54 1751.06
72. RPSA 214.92 1729.97 ribosomal protein SA
73. RPS11 ENSGALG00000017299 213.17 1715.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
74. MIF ENSGALG00000006326 208.80 1680.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
75. TPT1 ENSGALG00000028872 208.80 1680.71 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
76. RPS3A ENSGALG00000010077 205.31 1652.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
77. RPL37 ENSGALG00000014833 204.43 1645.54 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. RPS29 ENSGALG00000012229 200.94 1617.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
79. RPL12 ENSGALG00000008806 199.19 1603.36 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
80. RPLP1 ENSGALG00000030878 199.19 1603.36 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. EIF3F ENSGALG00000005326 197.44 1589.27 eukaryotic translation initiation factor 3 subunit F
82. NONO ENSGALG00000005507 194.82 1568.18 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
83. H2AFZ ENSGALG00000014023 193.95 1561.18 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
84. RPS8 ENSGALG00000010124 193.95 1561.18 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. IGF2BP3 ENSGALG00000010961 187.83 1511.92 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
86. TCF12 ENSGALG00000004304 187.83 1511.92 transcription factor 12 [Source:NCBI gene;Acc:396334]
87. RPS14 ENSGALG00000004588 186.96 1504.91 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
88. HNRNPA3 ENSGALG00000009250 185.21 1490.83 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
89. RPL29 ENSGALG00000026978 185.21 1490.83 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
90. CDK1 ENSGALG00000003085 184.34 1483.82 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. HNRNPDL ENSGALG00000023199 183.47 1476.82 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
92. RPL6 ENSGALG00000004818 182.59 1469.74 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
93. YWHAZ ENSGALG00000031387 181.72 1462.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. RPL27 ENSGALG00000002837 179.97 1448.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
95. HMGN2 HMGN2 179.10 1441.64
96. LDHB ENSGALG00000035836 176.48 1420.56 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. RPS15A ENSGALG00000006771 172.98 1392.38 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
98. C5ORF13 C5ORF13 172.11 1385.38
99. RPL23A ENSGALG00000003966 172.11 1385.38 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
100. RPL3 ENSGALG00000012172 170.36 1371.29 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA