Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s55.

Sample reads: 124,227. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5283.21 42531.07
2. MT-ND5 MT-ND5 4386.57 35312.91
3. MT-ATP6 MT-ATP6 4301.82 34630.65
4. MT-CYB MT-CYB 2074.64 16701.33
5. MT-ND4 MT-ND4 1898.36 15282.24
6. gga-mir-3527 gga-mir-3527 1771.24 14258.89
7. MT-ND3 MT-ND3 1732.25 13945.02
8. MT-CO1 MT-CO1 1649.20 13276.44
9. EEF1A EEF1A 1588.18 12785.22
10. gga-mir-3533 ENSGALG00000027736 1400.04 11270.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND1 MT-ND1 1374.62 11066.01
12. GAPDH ENSGALG00000014442 1347.50 10847.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 998.33 8036.79 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 894.94 7204.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 666.12 5362.42 ribosomal protein S23
16. MDK ENSGALG00000008367 644.09 5185.07 midkine [Source:NCBI gene;Acc:423196]
17. RPL5 ENSGALG00000005922 559.34 4502.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPS3 ENSGALG00000017330 530.52 4270.81 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL8 ENSGALG00000016232 516.96 4161.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS6 ENSGALG00000015082 500.01 4025.20 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. RPL15 ENSGALG00000011290 479.68 3861.54 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS7 ENSGALG00000016392 474.59 3820.56 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. STMN1 ENSGALG00000001475 461.03 3711.40 stathmin 1 [Source:NCBI gene;Acc:396057]
24. EIF4G2 ENSGALG00000005587 450.86 3629.53 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. TMSB4X ENSGALG00000026383 442.39 3561.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. ENO1 ENSGALG00000002377 437.30 3520.37 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. ATP6V0C ENSGALG00000009229 413.57 3329.33 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPL7A ENSGALG00000003197 405.10 3261.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. ENSGALG00000002696 ENSGALG00000002696 403.40 3247.46
30. RPL26 RPL26 396.62 3192.88
31. RPL23 ENSGALG00000001634 372.89 3001.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL18A 371.20 2988.25 ribosomal protein L18a
33. RPL31 ENSGALG00000016775 366.11 2947.27 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. RPS10 ENSGALG00000002813 357.64 2879.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. RPL7 ENSGALG00000035252 352.55 2838.11 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. MT-ND2 MT-ND2 340.69 2742.63
37. RPL27A ENSGALG00000005948 328.82 2647.08 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. CIRBP ENSGALG00000030918 325.43 2619.79 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPS16 ENSGALG00000026490 323.74 2606.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. EEF1B2 ENSGALG00000008590 315.26 2537.92 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
41. ENSGALG00000028992 ENSGALG00000028992 308.48 2483.34
42. ENSGALG00000018384 ENSGALG00000018384 306.79 2469.73
43. RPS4 RPS4 300.01 2415.15
44. RPL37 ENSGALG00000014833 294.92 2374.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
45. ALDH1A2 ENSGALG00000004270 291.53 2346.88 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
46. SNRPG ENSGALG00000028409 286.45 2305.99 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
47. ANP32B ENSGALG00000037483 279.67 2251.41 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
48. RPS27A ENSGALG00000036790 277.97 2237.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPL21 ENSGALG00000027035 276.28 2224.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. H2AFZ ENSGALG00000014023 266.11 2142.25 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. RAN ENSGALG00000002569 261.02 2101.27 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
52. RPS8 ENSGALG00000010124 261.02 2101.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
53. SLC25A6_1 ENSGALG00000016691 261.02 2101.27 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. TXN ENSGALG00000015704 257.63 2073.98 thioredoxin [Source:NCBI gene;Acc:396437]
55. RPSA 245.77 1978.51 ribosomal protein SA
56. NONO ENSGALG00000005507 244.07 1964.82 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
57. BTF3L4 ENSGALG00000010570 242.38 1951.22 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
58. NDUFB9 ENSGALG00000042242 242.38 1951.22 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
59. RPL10A ENSGALG00000002644 242.38 1951.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. HNRNPDL ENSGALG00000023199 240.68 1937.53 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
61. RPS15A ENSGALG00000006771 240.68 1937.53 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. RPL38 ENSGALG00000001465 237.30 1910.32 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
63. HMGN2 HMGN2 235.60 1896.63
64. RPS12 ENSGALG00000013990 235.60 1896.63 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. RPS29 ENSGALG00000012229 233.91 1883.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. H3-IX H3-IX 232.21 1869.34
67. RPS14 ENSGALG00000004588 232.21 1869.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS24 ENSGALG00000004871 232.21 1869.34 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. ERH ENSGALG00000017384 227.13 1828.45 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
70. ATP5G3 225.43 1814.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
71. EIF1 ENSGALG00000028517 225.43 1814.76 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
72. CRHOA CRHOA 223.74 1801.16
73. RPL36 ENSGALG00000000474 223.74 1801.16 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. FKBP4 ENSGALG00000014331 220.35 1773.87 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
75. RPL27 ENSGALG00000002837 220.35 1773.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
76. COX7C ENSGALG00000027963 218.65 1760.18 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
77. RPS11 ENSGALG00000017299 216.96 1746.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
78. RPS15 ENSGALG00000015195 215.26 1732.89 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
79. IGF2BP3 ENSGALG00000010961 213.57 1719.29 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
80. MIF ENSGALG00000006326 213.57 1719.29 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
81. RPL32 ENSGALG00000027142 213.57 1719.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
82. RPS20 ENSGALG00000014432 213.57 1719.29 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. KPNA2 ENSGALG00000003584 211.87 1705.60 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
84. MEIS2 ENSGALG00000039118 211.87 1705.60 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
85. RPL35A ENSGALG00000007611, ENSGALG00000041230 211.87 1705.60 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
86. RPL14 ENSGALG00000043379 210.18 1692.00 ribosomal protein L14
87. RPL12 ENSGALG00000008806 206.79 1664.71 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
88. EIF3F ENSGALG00000005326 203.40 1637.42 eukaryotic translation initiation factor 3 subunit F
89. ENSGALG00000018386 ENSGALG00000018386 203.40 1637.42
90. RPL29 ENSGALG00000026978 201.70 1623.73 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
91. RPL3 ENSGALG00000012172 200.01 1610.13 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. TCF12 ENSGALG00000004304 198.31 1596.44 transcription factor 12 [Source:NCBI gene;Acc:396334]
93. RPS3A ENSGALG00000010077 186.45 1500.97 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
94. HMGN5 ENSGALG00000007131 184.75 1487.28 high mobility group nucleosome binding domain 5, transcript variant X1
95. HNRNPA3 ENSGALG00000009250 184.75 1487.28 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. C5ORF13 C5ORF13 183.06 1473.68
97. RPL23A ENSGALG00000003966 181.36 1459.99 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
98. RPL6 ENSGALG00000004818 179.67 1446.39 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
99. RPL4 ENSGALG00000007711 171.19 1378.12 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
100. EIF5A2 ENSGALG00000009309 169.50 1364.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA