Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s48.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6215.94 50037.55
2. MT-ATP6 MT-ATP6 5148.54 41445.11
3. MT-ND5 MT-ND5 3920.93 31563.00
4. MT-CYB MT-CYB 2483.44 19991.39
5. gga-mir-3527 gga-mir-3527 2465.39 19846.09
6. MT-CO1 MT-CO1 2216.59 17843.28
7. gga-mir-3533 ENSGALG00000027736 1873.02 15077.58 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND4 MT-ND4 1777.11 14305.52
9. EEF1A EEF1A 1700.38 13687.85
10. MT-ND1 MT-ND1 1371.48 11040.25
11. PPIA ENSGALG00000028600 1182.48 9518.82 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. GAPDH ENSGALG00000014442 1166.69 9391.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 1126.63 9069.23
14. MDK ENSGALG00000008367 975.44 7852.17 midkine [Source:NCBI gene;Acc:423196]
15. NME2 ENSGALG00000002932 718.74 5785.77 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 632.99 5095.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. ATP6V0C ENSGALG00000009229 556.83 4482.41 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
18. RPS23 ENSGALG00000015617 554.57 4464.22 ribosomal protein S23
19. RPS6 ENSGALG00000015082 489.13 3937.44 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL8 ENSGALG00000016232 427.07 3437.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS3 ENSGALG00000017330 426.51 3433.35 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. RPL15 ENSGALG00000011290 416.35 3351.57 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS7 ENSGALG00000016392 410.15 3301.66 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. EIF4G2 ENSGALG00000005587 399.99 3219.87 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. STMN1 ENSGALG00000001475 398.30 3206.27 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL23 ENSGALG00000001634 388.71 3129.07 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. TMSB4X ENSGALG00000026383 375.73 3024.58 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPS27A ENSGALG00000036790 374.04 3010.98 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
29. ENO1 ENSGALG00000002377 370.09 2979.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPL26 RPL26 362.19 2915.58
31. RPL7A ENSGALG00000003197 362.19 2915.58 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL18A 355.42 2861.09 ribosomal protein L18a
33. RPL27A ENSGALG00000005948 350.34 2820.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. LUM ENSGALG00000011271 343.57 2765.70 lumican [Source:NCBI gene;Acc:417891]
35. RPL7 ENSGALG00000035252 333.98 2688.50 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. CIRBP ENSGALG00000030918 327.78 2638.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. ENSGALG00000002696 ENSGALG00000002696 326.65 2629.49
38. RPS10 ENSGALG00000002813 314.24 2529.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. RPS4 RPS4 312.55 2515.99
40. MT-ND2 MT-ND2 311.98 2511.40
41. RPS20 ENSGALG00000014432 303.52 2443.30 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. EIF1 ENSGALG00000028517 298.44 2402.41 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
43. MEIS2 ENSGALG00000039118 292.80 2357.00 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
44. CRHOA CRHOA 287.16 2311.60
45. ALDH1A2 ENSGALG00000004270 281.52 2266.20 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
46. SLC25A6_1 ENSGALG00000016691 275.88 2220.80 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. ATP5G3 257.82 2075.42 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. RPL31 ENSGALG00000016775 257.26 2070.91 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
49. TXN ENSGALG00000015704 249.92 2011.83 thioredoxin [Source:NCBI gene;Acc:396437]
50. RPS16 ENSGALG00000026490 249.36 2007.32 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. EIF3F ENSGALG00000005326 248.23 1998.22 eukaryotic translation initiation factor 3 subunit F
52. ENSGALG00000018384 ENSGALG00000018384 247.10 1989.12
53. EEF1B2 ENSGALG00000008590 245.97 1980.03 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. NDUFB9 ENSGALG00000042242 242.03 1948.31 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
55. ANP32B ENSGALG00000037483 236.95 1907.42 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. RPL36 ENSGALG00000000474 236.95 1907.42 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. ENSGALG00000028992 ENSGALG00000028992 230.18 1852.92
58. RPS12 ENSGALG00000013990 225.66 1816.54 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
59. RPS24 ENSGALG00000004871 225.66 1816.54 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. H3-IX H3-IX 224.54 1807.52
61. RPL21 ENSGALG00000027035 224.54 1807.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPS15 ENSGALG00000015195 217.77 1753.02 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS11 ENSGALG00000017299 217.20 1748.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
64. RPL12 ENSGALG00000008806 216.07 1739.34 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
65. RAN ENSGALG00000002569 215.51 1734.83 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
66. COL1A2 ENSGALG00000009641 214.38 1725.73 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
67. RPS8 ENSGALG00000010124 214.38 1725.73 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
68. RPL32 ENSGALG00000027142 211.00 1698.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
69. RPL35A ENSGALG00000007611, ENSGALG00000041230 211.00 1698.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
70. RPL37 ENSGALG00000014833 211.00 1698.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
71. SNRPG ENSGALG00000028409 208.74 1680.33 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
72. FKBP4 ENSGALG00000014331 208.18 1675.82 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
73. TPT1 ENSGALG00000028872 207.61 1671.23 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. RPL10A ENSGALG00000002644 204.79 1648.53 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS29 ENSGALG00000012229 204.23 1644.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
76. RPS14 ENSGALG00000004588 203.66 1639.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
77. ENSGALG00000018386 ENSGALG00000018386 202.53 1630.34
78. RPL38 ENSGALG00000001465 198.59 1598.63 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. RPS3A ENSGALG00000010077 195.76 1575.84 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
80. C5ORF13 C5ORF13 194.64 1566.83
81. RPS15A ENSGALG00000006771 192.94 1553.14 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. RPLP1 ENSGALG00000030878 192.38 1548.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
83. RPSA 189.56 1525.93 ribosomal protein SA
84. RPL29 ENSGALG00000026978 186.74 1503.23 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
85. RPL27 ENSGALG00000002837 186.17 1498.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
86. BTF3L4 ENSGALG00000010570 182.79 1471.44 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
87. CALM CALM 182.79 1471.44
88. RPL14 ENSGALG00000043379 180.53 1453.24 ribosomal protein L14
89. HNRNPDL ENSGALG00000023199 179.40 1444.15 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
90. RPL23A ENSGALG00000003966 176.58 1421.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
91. H2AFZ ENSGALG00000014023 175.45 1412.35 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. RPL4 ENSGALG00000007711 174.33 1403.34 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. PNRC1 ENSGALG00000015780 173.20 1394.24 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
94. COX7C ENSGALG00000027963 172.07 1385.14 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
95. ERH ENSGALG00000017384 170.38 1371.54 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
96. TCF12 ENSGALG00000004304 169.25 1362.44 transcription factor 12 [Source:NCBI gene;Acc:396334]
97. HMGN2 HMGN2 168.12 1353.35
98. HMGN5 ENSGALG00000007131 163.61 1317.04 high mobility group nucleosome binding domain 5, transcript variant X1
99. CNN3 ENSGALG00000005597 163.04 1312.45 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
100. IGF2BP3 ENSGALG00000010961 162.48 1307.94 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA