Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s38.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5747.47 46266.83
2. MT-ATP6 MT-ATP6 4982.01 40104.92
3. MT-ND5 MT-ND5 4538.73 36536.54
4. MT-CYB MT-CYB 2486.68 20017.64
5. gga-mir-3533 ENSGALG00000027736 1922.31 15474.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ND4 MT-ND4 1911.50 15387.47
7. gga-mir-3527 gga-mir-3527 1885.55 15178.58
8. EEF1A EEF1A 1703.91 13716.39
9. MT-CO1 MT-CO1 1591.47 12811.25
10. MT-ND3 MT-ND3 1533.09 12341.29
11. MT-ND1 MT-ND1 1450.92 11679.83
12. GAPDH ENSGALG00000014442 1271.45 10235.11 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1033.59 8320.34 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 685.46 5517.92 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL15 ENSGALG00000011290 685.46 5517.92 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPS23 ENSGALG00000015617 683.30 5500.53 ribosomal protein S23
17. RPL5 ENSGALG00000005922 670.32 5396.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. TMSB4X ENSGALG00000026383 633.56 5100.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPS6 ENSGALG00000015082 588.15 4734.58 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL8 ENSGALG00000016232 551.39 4438.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. MDK ENSGALG00000008367 495.17 3986.09 midkine [Source:NCBI gene;Acc:423196]
22. RPL7 ENSGALG00000035252 464.90 3742.42 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL18A 438.95 3533.52 ribosomal protein L18a
24. RPS3 ENSGALG00000017330 436.79 3516.14 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. ENSGALG00000002696 ENSGALG00000002696 432.47 3481.36
26. RPS7 ENSGALG00000016392 419.49 3376.87 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. RPL27A ENSGALG00000005948 413.00 3324.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL31 ENSGALG00000016775 404.36 3255.08 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
29. STMN1 ENSGALG00000001475 400.03 3220.22 stathmin 1 [Source:NCBI gene;Acc:396057]
30. CIRBP ENSGALG00000030918 384.89 3098.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL26 RPL26 384.89 3098.34
32. EIF4G2 ENSGALG00000005587 378.41 3046.18 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. MT-ND2 MT-ND2 365.43 2941.69
34. NDUFB9 ENSGALG00000042242 348.13 2802.43 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
35. RPS10 ENSGALG00000002813 341.65 2750.26 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
36. RPL21 ENSGALG00000027035 337.32 2715.41 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. ENO1 ENSGALG00000002377 333.00 2680.63 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. RPS4 RPS4 320.02 2576.14
39. RPL32 ENSGALG00000027142 315.70 2541.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL7A ENSGALG00000003197 315.70 2541.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPS11 ENSGALG00000017299 315.70 2541.37 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. RPS29 ENSGALG00000012229 302.73 2436.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
43. ENSGALG00000018384 ENSGALG00000018384 298.40 2402.10
44. EEF1B2 ENSGALG00000008590 296.24 2384.72 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RPL38 ENSGALG00000001465 289.75 2332.47 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. RPS16 ENSGALG00000026490 287.59 2315.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPS20 ENSGALG00000014432 287.59 2315.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. RPL37 ENSGALG00000014833 285.43 2297.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
49. RPLP1 ENSGALG00000030878 283.27 2280.31 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
50. ATP5G3 281.10 2262.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
51. CRHOA CRHOA 274.62 2210.68
52. RPS15A ENSGALG00000006771 268.13 2158.43 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. H3-IX H3-IX 259.48 2088.80
54. RPS14 ENSGALG00000004588 259.48 2088.80 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. ATP6V0C ENSGALG00000009229 257.32 2071.41 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 257.32 2071.41 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPS12 ENSGALG00000013990 257.32 2071.41 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. HMGN5 ENSGALG00000007131 244.34 1966.92 high mobility group nucleosome binding domain 5, transcript variant X1
59. RPL14 ENSGALG00000043379 242.18 1949.54 ribosomal protein L14
60. ENSGALG00000028992 ENSGALG00000028992 237.86 1914.76
61. RPS15 ENSGALG00000015195 237.86 1914.76 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
62. RPSA 237.86 1914.76 ribosomal protein SA
63. SNRPG ENSGALG00000028409 231.37 1862.52 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. COX7C ENSGALG00000027963 229.21 1845.13 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
65. ENSGALG00000018386 ENSGALG00000018386 227.04 1827.66
66. RAN ENSGALG00000002569 227.04 1827.66 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
67. LDHB ENSGALG00000035836 224.88 1810.27 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
68. RPS8 ENSGALG00000010124 224.88 1810.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
69. RPL36 ENSGALG00000000474 220.56 1775.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPL4 ENSGALG00000007711 220.56 1775.50 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
71. RPS27A ENSGALG00000036790 220.56 1775.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
72. EIF1 ENSGALG00000028517 216.23 1740.64 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
73. RPL23A ENSGALG00000003966 216.23 1740.64 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
74. SLC25A6_1 ENSGALG00000016691 216.23 1740.64 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
75. RPL10A ENSGALG00000002644 214.07 1723.25 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. RPL23 ENSGALG00000001634 214.07 1723.25 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. LUM ENSGALG00000011271 211.91 1705.86 lumican [Source:NCBI gene;Acc:417891]
78. RPL27 ENSGALG00000002837 211.91 1705.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
79. RPS21 ENSGALG00000005338 209.75 1688.48 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
80. ERH ENSGALG00000017384 207.58 1671.01 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
81. FKBP4 ENSGALG00000014331 205.42 1653.62 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
82. TPT1 ENSGALG00000028872 203.26 1636.23 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
83. TXN ENSGALG00000015704 201.10 1618.84 thioredoxin [Source:NCBI gene;Acc:396437]
84. NONO ENSGALG00000005507 198.93 1601.38 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
85. HMGN2 HMGN2 196.77 1583.99
86. RPL29 ENSGALG00000026978 196.77 1583.99 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
87. IGF2BP3 ENSGALG00000010961 188.12 1514.36 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
88. RPS24 ENSGALG00000004871 188.12 1514.36 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. MIF ENSGALG00000006326 185.96 1496.97 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
90. C5ORF13 C5ORF13 181.64 1462.19
91. RPL12 ENSGALG00000008806 181.64 1462.19 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
92. RPL13 ENSGALG00000006179 179.47 1444.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
93. RPL6 ENSGALG00000004818 179.47 1444.72 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
94. MT-ND6 MT-ND6 177.31 1427.34
95. COX6A1 ENSGALG00000007205 172.99 1392.56 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
96. RPS3A ENSGALG00000010077 172.99 1392.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
97. SNRPE ENSGALG00000000137 172.99 1392.56 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
98. ARF4 ENSGALG00000005622 168.66 1357.70 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
99. RPL3 ENSGALG00000012172 168.66 1357.70 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. BTF3L4 ENSGALG00000010570 166.50 1340.32 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA