Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s35.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5386.12 43355.54
2. MT-ATP6 MT-ATP6 4393.86 35368.35
3. MT-ND5 MT-ND5 3942.57 31735.69
4. MT-CYB MT-CYB 2860.64 23026.70
5. gga-mir-3533 ENSGALG00000027736 2571.05 20695.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. gga-mir-3527 gga-mir-3527 2166.80 17441.64
7. EEF1A EEF1A 1659.64 13359.26
8. MT-ND4 MT-ND4 1583.20 12743.96
9. GAPDH ENSGALG00000014442 1534.69 12353.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-CO1 MT-CO1 1399.45 11264.86
11. MT-ND3 MT-ND3 1198.06 9643.78
12. MT-ND1 MT-ND1 1189.24 9572.78
13. PPIA ENSGALG00000028600 1137.79 9158.63 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPS23 ENSGALG00000015617 887.89 7147.06 ribosomal protein S23
15. NME2 ENSGALG00000002932 798.22 6425.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 660.03 5312.91 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TMSB4X ENSGALG00000026383 632.10 5088.08 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. MDK ENSGALG00000008367 617.40 4969.76 midkine [Source:NCBI gene;Acc:423196]
19. RPL15 ENSGALG00000011290 573.30 4614.77 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. ATP6V0C ENSGALG00000009229 527.73 4247.96 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
21. RPL18A 527.73 4247.96 ribosomal protein L18a
22. RPL8 ENSGALG00000016232 526.26 4236.13 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS6 ENSGALG00000015082 523.32 4212.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. RPL23 ENSGALG00000001634 511.56 4117.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPS7 ENSGALG00000016392 486.57 3916.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL7 ENSGALG00000035252 449.82 3620.82 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
27. RPS3 ENSGALG00000017330 448.35 3608.99 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
28. STMN1 ENSGALG00000001475 448.35 3608.99 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL7A ENSGALG00000003197 446.88 3597.16 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. ENSGALG00000002696 ENSGALG00000002696 443.94 3573.49
31. RPL27A ENSGALG00000005948 421.89 3396.00 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. EIF4G2 ENSGALG00000005587 413.07 3325.00 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. RPS10 ENSGALG00000002813 380.73 3064.68 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPL26 RPL26 374.85 3017.35
35. RPS27A ENSGALG00000036790 366.03 2946.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
36. RPL31 ENSGALG00000016775 364.56 2934.52 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. CIRBP ENSGALG00000030918 358.68 2887.19 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. RPS4 RPS4 349.86 2816.20
39. RPS15 ENSGALG00000015195 341.04 2745.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
40. MT-ND2 MT-ND2 318.99 2567.71
41. NDUFB9 ENSGALG00000042242 307.23 2473.05 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
42. RPL27 ENSGALG00000002837 307.23 2473.05 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. ENO1 ENSGALG00000002377 301.35 2425.71 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
44. EEF1B2 ENSGALG00000008590 295.47 2378.38 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RPS11 ENSGALG00000017299 295.47 2378.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. ATP5G3 286.65 2307.39 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. RPS15A ENSGALG00000006771 286.65 2307.39 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPSA 283.71 2283.72 ribosomal protein SA
49. H3-IX H3-IX 282.24 2271.89
50. FKBP4 ENSGALG00000014331 280.77 2260.06 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. RPS20 ENSGALG00000014432 279.30 2248.22 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RPL21 ENSGALG00000027035 277.83 2236.39 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. EIF1 ENSGALG00000028517 271.95 2189.06 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
54. RPL36 ENSGALG00000000474 270.48 2177.23 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
55. RPS16 ENSGALG00000026490 269.01 2165.39 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. SLC25A6_1 ENSGALG00000016691 267.54 2153.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPL32 ENSGALG00000027142 264.60 2129.90 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPL38 ENSGALG00000001465 264.60 2129.90 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. TPT1 ENSGALG00000028872 263.13 2118.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. RPL35A ENSGALG00000007611, ENSGALG00000041230 260.19 2094.40 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
61. RPS24 ENSGALG00000004871 260.19 2094.40 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. RAN ENSGALG00000002569 257.25 2070.73 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. ENSGALG00000028992 ENSGALG00000028992 255.78 2058.90
64. RPS29 ENSGALG00000012229 254.31 2047.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. SNRPG ENSGALG00000028409 254.31 2047.07 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. RPL4 ENSGALG00000007711 252.84 2035.23 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
67. RPS12 ENSGALG00000013990 242.55 1952.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
68. RPS14 ENSGALG00000004588 230.79 1857.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
69. ANP32B ENSGALG00000037483 229.32 1845.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. ENSGALG00000018384 ENSGALG00000018384 227.85 1834.08
71. RPL14 ENSGALG00000043379 227.85 1834.08 ribosomal protein L14
72. TXN ENSGALG00000015704 221.97 1786.75 thioredoxin [Source:NCBI gene;Acc:396437]
73. RPL12 ENSGALG00000008806 220.50 1774.91 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. RPL10A ENSGALG00000002644 219.03 1763.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS3A ENSGALG00000010077 219.03 1763.08 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. RPLP1 ENSGALG00000030878 217.56 1751.25 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. LDHB ENSGALG00000035836 213.15 1715.75 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
78. RPS8 ENSGALG00000010124 213.15 1715.75 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
79. NONO ENSGALG00000005507 211.68 1703.92 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
80. EIF3F ENSGALG00000005326 210.21 1692.08 eukaryotic translation initiation factor 3 subunit F
81. H2AFZ ENSGALG00000014023 208.74 1680.25 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
82. CRHOA CRHOA 204.33 1644.75
83. RPL6 ENSGALG00000004818 204.33 1644.75 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
84. RPS21 ENSGALG00000005338 204.33 1644.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
85. RPL23A ENSGALG00000003966 202.86 1632.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
86. RPL37 ENSGALG00000014833 201.39 1621.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. CRABP-I ENSGALG00000003193 196.98 1585.59 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
88. EEF1D 194.04 1561.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. IGF2BP3 ENSGALG00000010961 185.22 1490.93 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
90. YWHAZ ENSGALG00000031387 185.22 1490.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
91. KPNA2 ENSGALG00000003584 180.81 1455.43 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
92. RPL29 ENSGALG00000026978 180.81 1455.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
93. CALM CALM 179.34 1443.60
94. CDK1 ENSGALG00000003085 179.34 1443.60 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
95. HMGN5 ENSGALG00000007131 179.34 1443.60 high mobility group nucleosome binding domain 5, transcript variant X1
96. MEIS2 ENSGALG00000039118 179.34 1443.60 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
97. C5ORF13 C5ORF13 177.87 1431.76
98. RPL3 ENSGALG00000012172 177.87 1431.76 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. HMGN2 HMGN2 176.40 1419.93
100. HNRNPA3 ENSGALG00000009250 174.93 1408.10 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA