Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s30.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5226.53 42069.96
2. MT-ATP6 MT-ATP6 3670.65 29546.20
3. MT-ND5 MT-ND5 3182.45 25616.52
4. MT-CYB MT-CYB 2246.57 18083.34
5. gga-mir-3527 gga-mir-3527 1921.84 15469.48
6. gga-mir-3533 ENSGALG00000027736 1780.47 14331.55 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. EEF1A EEF1A 1692.11 13620.32
8. MT-CO1 MT-CO1 1678.85 13513.58
9. MT-ND4 MT-ND4 1675.17 13483.96
10. GAPDH ENSGALG00000014442 1269.45 10218.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND3 MT-ND3 1200.97 9666.98
12. MT-ND1 MT-ND1 1177.41 9477.34
13. PPIA ENSGALG00000028600 1161.21 9346.94 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 766.53 6170.04 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 727.50 5855.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 663.44 5340.23 ribosomal protein S23
17. RPL15 ENSGALG00000011290 569.19 4581.59 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS6 ENSGALG00000015082 540.47 4350.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPS3 ENSGALG00000017330 521.33 4196.35 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL8 ENSGALG00000016232 519.85 4184.43 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. TMSB4X ENSGALG00000026383 491.87 3959.21 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. STMN1 ENSGALG00000001475 477.88 3846.60 stathmin 1 [Source:NCBI gene;Acc:396057]
23. RPS7 ENSGALG00000016392 446.22 3591.76 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL27A ENSGALG00000005948 439.59 3538.40 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPL7 ENSGALG00000035252 435.91 3508.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPL18A 428.55 3449.53 ribosomal protein L18a
27. ATP6V0C ENSGALG00000009229 426.34 3431.74 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. EIF4G2 ENSGALG00000005587 416.03 3348.75 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
29. MDK ENSGALG00000008367 414.56 3336.92 midkine [Source:NCBI gene;Acc:423196]
30. ENSGALG00000002696 ENSGALG00000002696 413.82 3330.97
31. RPL7A ENSGALG00000003197 393.20 3164.99 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. CIRBP ENSGALG00000030918 377.01 3034.67 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPS10 ENSGALG00000002813 367.43 2957.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPL26 RPL26 351.23 2827.16
35. RPL31 ENSGALG00000016775 342.40 2756.08 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
36. RPS4 RPS4 329.88 2655.31
37. MT-ND2 MT-ND2 326.93 2631.56
38. RPS11 ENSGALG00000017299 314.42 2530.86 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPL23 ENSGALG00000001634 303.37 2441.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. ENO1 ENSGALG00000002377 296.74 2388.55 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. CRHOA CRHOA 296.01 2382.68
42. RPS12 ENSGALG00000013990 293.80 2364.89 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. EIF1 ENSGALG00000028517 284.96 2293.73 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
44. NDUFB9 ENSGALG00000042242 283.49 2281.90 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
45. RPS8 ENSGALG00000010124 282.75 2275.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
46. RPS16 ENSGALG00000026490 280.54 2258.15 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. SLC25A6_1 ENSGALG00000016691 280.54 2258.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. RPL21 ENSGALG00000027035 279.81 2252.28 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. H3-IX H3-IX 273.92 2204.87
50. RPS20 ENSGALG00000014432 273.18 2198.91 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
51. RPS27A ENSGALG00000036790 270.24 2175.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. EEF1B2 ENSGALG00000008590 267.29 2151.50 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
53. RPL37 ENSGALG00000014833 261.40 2104.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
54. ATP5G3 260.66 2098.13 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
55. RPS29 ENSGALG00000012229 256.25 2062.64 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
56. RPL32 ENSGALG00000027142 248.15 1997.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. TXN ENSGALG00000015704 245.20 1973.69 thioredoxin [Source:NCBI gene;Acc:396437]
58. ENSGALG00000028992 ENSGALG00000028992 244.46 1967.73
59. FKBP4 ENSGALG00000014331 244.46 1967.73 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
60. RPS14 ENSGALG00000004588 242.26 1950.03 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPLP1 ENSGALG00000030878 240.05 1932.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
62. RPS24 ENSGALG00000004871 238.57 1920.32 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
63. SNRPG ENSGALG00000028409 238.57 1920.32 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. RPL4 ENSGALG00000007711 237.10 1908.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
65. RPS15A ENSGALG00000006771 237.10 1908.49 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
66. RPL14 ENSGALG00000043379 234.89 1890.70 ribosomal protein L14
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 234.16 1884.83 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. ENSGALG00000018384 ENSGALG00000018384 231.95 1867.04
69. H2AFZ ENSGALG00000014023 226.06 1819.63 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
70. ERH ENSGALG00000017384 225.32 1813.67 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
71. RAN ENSGALG00000002569 223.85 1801.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
72. RPS15 ENSGALG00000015195 222.37 1789.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. RPL38 ENSGALG00000001465 221.64 1784.05 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPL27 ENSGALG00000002837 218.69 1760.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
75. HMGN5 ENSGALG00000007131 217.96 1754.43 high mobility group nucleosome binding domain 5, transcript variant X1
76. RPL12 ENSGALG00000008806 213.54 1718.85 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
77. RPS3A ENSGALG00000010077 212.07 1707.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
78. KPNA2 ENSGALG00000003584 210.59 1695.10 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
79. LDHB ENSGALG00000035836 206.17 1659.53 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. ANP32B ENSGALG00000037483 202.49 1629.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. MT-ND6 MT-ND6 199.55 1606.24
82. EIF3F ENSGALG00000005326 198.08 1594.41 eukaryotic translation initiation factor 3 subunit F
83. RPL36 ENSGALG00000000474 197.34 1588.45 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
84. RPL10A ENSGALG00000002644 195.87 1576.62 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. RPSA 195.87 1576.62 ribosomal protein SA
86. COX7C ENSGALG00000027963 195.13 1570.66 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
87. MIF ENSGALG00000006326 194.39 1564.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. HMGN2 HMGN2 193.66 1558.83
89. IGF2BP3 ENSGALG00000010961 192.18 1546.92 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
90. RPL29 ENSGALG00000026978 192.18 1546.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
91. TPT1 ENSGALG00000028872 191.45 1541.04 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
92. RPL23A ENSGALG00000003966 189.98 1529.21 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
93. ENSGALG00000018386 ENSGALG00000018386 188.50 1517.29
94. BTF3L4 ENSGALG00000010570 182.61 1469.88 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
95. SNRPE ENSGALG00000000137 180.40 1452.10 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. NONO ENSGALG00000005507 179.67 1446.22 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. CALM CALM 178.19 1434.31
98. CDK1 ENSGALG00000003085 175.25 1410.64 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. RPL3 ENSGALG00000012172 172.30 1386.90 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. ACTC1 ENSGALG00000009844 171.57 1381.02 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA