Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s22.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5185.21 41735.49
2. MT-ATP6 MT-ATP6 3842.90 30931.31
3. MT-ND5 MT-ND5 2584.80 20804.92
4. MT-CYB MT-CYB 2164.87 17424.93
5. EEF1A EEF1A 1826.37 14700.36
6. MT-CO1 MT-CO1 1805.73 14534.23
7. gga-mir-3527 gga-mir-3527 1766.70 14220.08
8. gga-mir-3533 ENSGALG00000027736 1607.20 12936.27 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. GAPDH ENSGALG00000014442 1584.90 12756.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND4 MT-ND4 1580.99 12725.31
11. MT-ND1 MT-ND1 1205.12 9699.95
12. PPIA ENSGALG00000028600 1177.80 9480.05 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 1021.65 8223.21
14. NME2 ENSGALG00000002932 727.20 5853.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 685.38 5516.59 ribosomal protein S23
16. RPL5 ENSGALG00000005922 657.49 5292.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPS6 ENSGALG00000015082 533.69 4295.64 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL8 ENSGALG00000016232 495.21 3985.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. ENO1 ENSGALG00000002377 472.35 3801.92 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPL15 ENSGALG00000011290 471.79 3797.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. STMN1 ENSGALG00000001475 452.27 3640.30 stathmin 1 [Source:NCBI gene;Acc:396057]
22. RPS3 ENSGALG00000017330 445.58 3586.45 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. RPS7 ENSGALG00000016392 441.12 3550.55 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. TMSB4X ENSGALG00000026383 441.12 3550.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. EIF4G2 ENSGALG00000005587 432.19 3478.68 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. RPL18A 430.52 3465.23 ribosomal protein L18a
27. RPL23 ENSGALG00000001634 426.06 3429.34 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. RPL7 ENSGALG00000035252 417.69 3361.97 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. CRABP-I ENSGALG00000003193 412.12 3317.13 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
30. CIRBP ENSGALG00000030918 407.66 3281.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL27A ENSGALG00000005948 405.43 3263.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL7A ENSGALG00000003197 401.52 3231.81 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. ENSGALG00000002696 ENSGALG00000002696 398.73 3209.36
34. RPS4 RPS4 388.70 3128.63
35. RPL26 RPL26 363.04 2922.09
36. ATP6V0C ENSGALG00000009229 357.47 2877.26 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
37. MT-ND2 MT-ND2 347.99 2800.95
38. ENSGALG00000018384 ENSGALG00000018384 341.29 2747.03
39. MDK ENSGALG00000008367 341.29 2747.03 midkine [Source:NCBI gene;Acc:423196]
40. RPS10 ENSGALG00000002813 340.74 2742.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. RPS27A ENSGALG00000036790 326.79 2630.32 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPL31 ENSGALG00000016775 307.28 2473.28 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RAN ENSGALG00000002569 302.26 2432.88 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
44. LDHB ENSGALG00000035836 289.43 2329.61 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. HMGN5 ENSGALG00000007131 283.30 2280.27 high mobility group nucleosome binding domain 5, transcript variant X1
46. RPS12 ENSGALG00000013990 282.74 2275.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. RPS20 ENSGALG00000014432 279.95 2253.30 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
48. EIF1 ENSGALG00000028517 278.28 2239.86 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
49. SLC25A6_1 ENSGALG00000016691 274.93 2212.90 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. RPS16 ENSGALG00000026490 272.14 2190.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. SNRPG ENSGALG00000028409 272.14 2190.44 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
52. RPS15 ENSGALG00000015195 269.35 2167.98 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. H2AFZ ENSGALG00000014023 268.24 2159.05 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
54. RPL32 ENSGALG00000027142 267.12 2150.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPS11 ENSGALG00000017299 267.12 2150.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. EEF1B2 ENSGALG00000008590 264.89 2132.09 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
57. RPL21 ENSGALG00000027035 263.22 2118.64 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL27 ENSGALG00000002837 261.55 2105.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
59. ANP32B ENSGALG00000037483 260.99 2100.70 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. MIF ENSGALG00000006326 260.99 2100.70 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
61. CRHOA CRHOA 249.28 2006.44
62. ATP5G3 247.05 1988.49 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPS8 ENSGALG00000010124 245.37 1974.97 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
64. RPL36 ENSGALG00000000474 244.26 1966.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPS24 ENSGALG00000004871 243.14 1957.02 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. RPS14 ENSGALG00000004588 238.12 1916.62 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. TXN ENSGALG00000015704 236.45 1903.17 thioredoxin [Source:NCBI gene;Acc:396437]
68. RPS29 ENSGALG00000012229 234.78 1889.73 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. FKBP4 ENSGALG00000014331 231.43 1862.77 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
70. H3-IX H3-IX 229.76 1849.33
71. RPSA 227.53 1831.38 ribosomal protein SA
72. ENSGALG00000028992 ENSGALG00000028992 225.86 1817.94
73. RPL10A ENSGALG00000002644 223.63 1799.99 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPS15A ENSGALG00000006771 221.95 1786.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
75. NDUFB9 ENSGALG00000042242 218.05 1755.07 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 217.49 1750.57 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. RPL14 ENSGALG00000043379 210.80 1696.72 ribosomal protein L14
78. HNRNPDL ENSGALG00000023199 208.01 1674.26 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. RPL37 ENSGALG00000014833 206.90 1665.33 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
80. RPLP1 ENSGALG00000030878 206.90 1665.33 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. HMGN2 HMGN2 201.32 1620.41
82. EIF5A2 ENSGALG00000009309 200.20 1611.40 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
83. RPL38 ENSGALG00000001465 200.20 1611.40 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. RPL12 ENSGALG00000008806 197.97 1593.45 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
85. CDK1 ENSGALG00000003085 192.95 1553.04 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
86. ENSGALG00000018386 ENSGALG00000018386 192.95 1553.04
87. ERH ENSGALG00000017384 192.40 1548.62 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
88. BTF3L4 ENSGALG00000010570 191.84 1544.11 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
89. NONO ENSGALG00000005507 191.28 1539.60 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
90. EIF3F ENSGALG00000005326 185.70 1494.69 eukaryotic translation initiation factor 3 subunit F
91. HNRNPA3 ENSGALG00000009250 185.15 1490.26 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
92. RPL23A ENSGALG00000003966 183.47 1476.74 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
93. CALM CALM 181.80 1463.30
94. TPT1 ENSGALG00000028872 180.68 1454.28 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
95. RPL29 ENSGALG00000026978 180.13 1449.86 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. KPNA2 ENSGALG00000003584 179.57 1445.35 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
97. RPL3 ENSGALG00000012172 179.57 1445.35 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. RPS3A ENSGALG00000010077 179.57 1445.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
99. COX7C ENSGALG00000027963 179.01 1440.84 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
100. SNRPE ENSGALG00000000137 176.78 1422.89 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA