Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s20.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5872.36 47268.43
2. MT-CO3 MT-CO3 5276.39 42471.29
3. MT-ND5 MT-ND5 3912.88 31495.97
4. MT-CYB MT-CYB 2346.08 18884.32
5. gga-mir-3527 gga-mir-3527 2224.45 17905.28
6. MT-ND4 MT-ND4 1853.93 14922.85
7. gga-mir-3533 ENSGALG00000027736 1827.00 14706.08 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-CO1 MT-CO1 1797.89 14471.77
9. EEF1A EEF1A 1518.15 12220.06
10. MT-ND1 MT-ND1 1459.08 11744.58
11. GAPDH ENSGALG00000014442 1404.78 11307.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1224.51 9856.46
13. PPIA ENSGALG00000028600 1221.04 9828.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 832.27 6699.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 685.01 5513.86 ribosomal protein S23
16. RPL5 ENSGALG00000005922 661.56 5325.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL15 ENSGALG00000011290 582.94 4692.26 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. STMN1 ENSGALG00000001475 520.39 4188.78 stathmin 1 [Source:NCBI gene;Acc:396057]
19. MT-ND2 MT-ND2 512.13 4122.29
20. RPS6 ENSGALG00000015082 468.26 3769.17 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. ATP6V0C ENSGALG00000009229 448.28 3608.34 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
22. ENO1 ENSGALG00000002377 447.84 3604.80 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. CRABP-I ENSGALG00000003193 446.11 3590.88 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
24. RPL18A 422.22 3398.58 ribosomal protein L18a
25. RPS7 ENSGALG00000016392 418.31 3367.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL8 ENSGALG00000016232 417.00 3356.56 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. EIF4G2 ENSGALG00000005587 407.01 3276.15 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. ENSGALG00000002696 ENSGALG00000002696 400.50 3223.75
29. RPL27A ENSGALG00000005948 397.89 3202.74 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS29 ENSGALG00000012229 390.07 3139.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL7A ENSGALG00000003197 388.33 3125.79 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPL7 ENSGALG00000035252 361.84 2912.56 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. RPS10 ENSGALG00000002813 358.36 2884.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. RPS20 ENSGALG00000014432 346.63 2790.13 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
35. TMSB4X ENSGALG00000026383 344.90 2776.21 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RPL31 ENSGALG00000016775 327.96 2639.85 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS16 ENSGALG00000026490 323.61 2604.84 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. RPL26 RPL26 323.18 2601.38
39. CIRBP ENSGALG00000030918 315.79 2541.89 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. EIF1 ENSGALG00000028517 307.11 2472.02 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
41. RPL23 ENSGALG00000001634 294.07 2367.06 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. RPS4 RPS4 292.34 2353.13
43. RPS11 ENSGALG00000017299 286.26 2304.19 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. ENSGALG00000018384 ENSGALG00000018384 285.82 2300.65
45. RPS3 ENSGALG00000017330 282.78 2276.18 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
46. MDK ENSGALG00000008367 282.35 2272.72 midkine [Source:NCBI gene;Acc:423196]
47. FKBP4 ENSGALG00000014331 281.91 2269.18 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
48. SNRPG ENSGALG00000028409 279.74 2251.71 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. MIF ENSGALG00000006326 278.87 2244.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
50. RPS27A ENSGALG00000036790 277.57 2234.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPS15 ENSGALG00000015195 274.09 2206.23 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
52. ANP32B ENSGALG00000037483 272.36 2192.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. RAN ENSGALG00000002569 264.54 2129.36 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
54. RPL21 ENSGALG00000027035 259.76 2090.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. EEF1D 258.89 2083.89 eukaryotic translation elongation factor 1 delta, transcript variant X13
56. H2AFZ ENSGALG00000014023 255.85 2059.42 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. ATP5G3 253.68 2041.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPLP1 ENSGALG00000030878 252.37 2031.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. LDHB ENSGALG00000035836 245.86 1979.00 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
60. RPL37 ENSGALG00000014833 243.69 1961.54 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. RPS12 ENSGALG00000013990 242.82 1954.53 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
62. RPS14 ENSGALG00000004588 242.82 1954.53 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. SLC25A6_1 ENSGALG00000016691 242.82 1954.53 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
64. HMGN5 ENSGALG00000007131 238.91 1923.06 high mobility group nucleosome binding domain 5, transcript variant X1
65. NDUFB9 ENSGALG00000042242 238.47 1919.52 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
66. RPL27 ENSGALG00000002837 234.13 1884.58 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
67. H3-IX H3-IX 233.70 1881.12
68. RPL32 ENSGALG00000027142 228.48 1839.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
69. RPS15A ENSGALG00000006771 228.48 1839.11 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
70. ENSGALG00000028992 ENSGALG00000028992 228.05 1835.64
71. RPL36 ENSGALG00000000474 227.61 1832.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. EEF1B2 ENSGALG00000008590 227.18 1828.64 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
73. RPS8 ENSGALG00000010124 226.75 1825.18 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. RPS24 ENSGALG00000004871 223.27 1797.17 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. ACTC1 ENSGALG00000009844 221.97 1786.70 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
76. RPL38 ENSGALG00000001465 221.97 1786.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. TXN ENSGALG00000015704 221.97 1786.70 thioredoxin [Source:NCBI gene;Acc:396437]
78. RPSA 219.80 1769.24 ribosomal protein SA
79. RPL4 ENSGALG00000007711 218.06 1755.23 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
80. RPL12 ENSGALG00000008806 215.89 1737.76 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
81. EIF3F ENSGALG00000005326 215.02 1730.76 eukaryotic translation initiation factor 3 subunit F
82. RPL10A ENSGALG00000002644 214.15 1723.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. RPL14 ENSGALG00000043379 213.28 1716.76 ribosomal protein L14
84. RPS3A ENSGALG00000010077 212.41 1709.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
85. RPL23A ENSGALG00000003966 211.54 1702.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
86. CRHOA CRHOA 207.20 1667.82
87. CDK1 ENSGALG00000003085 199.81 1608.33 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
88. EIF5A2 ENSGALG00000009309 194.17 1562.93 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. RPL35A ENSGALG00000007611, ENSGALG00000041230 193.73 1559.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
90. RPL29 ENSGALG00000026978 187.22 1506.99 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
91. HMGN2 HMGN2 186.78 1503.45
92. COX7C ENSGALG00000027963 186.35 1499.99 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
93. ERH ENSGALG00000017384 182.00 1464.97 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. RPS21 ENSGALG00000005338 180.27 1451.05 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. SNRPE ENSGALG00000000137 180.27 1451.05 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. HNRNPDL ENSGALG00000023199 178.96 1440.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. KPNA2 ENSGALG00000003584 177.23 1426.58 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
98. BTF3L4 ENSGALG00000010570 176.79 1423.04 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
99. RPL3 ENSGALG00000012172 173.32 1395.11 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. ENSGALG00000018386 ENSGALG00000018386 171.58 1381.10
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA