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Experiment Chicken_E3_anterior_slice_3, section s18.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4993.53 40194.60
2. MT-ATP6 MT-ATP6 4878.21 39266.35
3. MT-ND5 MT-ND5 3132.49 25214.46
4. MT-CYB MT-CYB 2317.58 18654.98
5. MT-CO1 MT-CO1 1923.14 15480.00
6. gga-mir-3527 gga-mir-3527 1873.46 15080.11
7. EEF1A EEF1A 1706.10 13732.97
8. gga-mir-3533 ENSGALG00000027736 1650.51 13285.51 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. GAPDH ENSGALG00000014442 1535.79 12362.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND4 MT-ND4 1517.46 12214.54
11. MT-ND1 MT-ND1 1448.27 11657.61
12. PPIA ENSGALG00000028600 1360.15 10948.30 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 966.30 7778.07
14. NME2 ENSGALG00000002932 810.18 6521.41 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 681.85 5488.44 ribosomal protein S23
16. RPL5 ENSGALG00000005922 660.56 5317.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL15 ENSGALG00000011290 603.20 4855.36 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS6 ENSGALG00000015082 563.58 4536.44 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. CRABP-I ENSGALG00000003193 505.03 4065.16 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
20. RPL8 ENSGALG00000016232 491.43 3955.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. STMN1 ENSGALG00000001475 487.88 3927.11 stathmin 1 [Source:NCBI gene;Acc:396057]
22. ENO1 ENSGALG00000002377 474.87 3822.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS7 ENSGALG00000016392 462.45 3722.42 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. CIRBP ENSGALG00000030918 450.62 3627.19 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. EIF4G2 ENSGALG00000005587 441.16 3551.04 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. ATP6V0C ENSGALG00000009229 413.96 3332.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
27. RPL18A 411.59 3313.03 ribosomal protein L18a
28. RPL23 ENSGALG00000001634 409.82 3298.78 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. ENSGALG00000002696 ENSGALG00000002696 396.22 3189.31
30. RPL27A ENSGALG00000005948 394.44 3174.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPS3 ENSGALG00000017330 392.08 3155.98 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
32. RPS27A ENSGALG00000036790 383.80 3089.33 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
33. TMSB4X ENSGALG00000026383 380.84 3065.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. MDK ENSGALG00000008367 356.00 2865.56 midkine [Source:NCBI gene;Acc:423196]
35. RPL7 ENSGALG00000035252 355.41 2860.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. RPL7A ENSGALG00000003197 349.50 2813.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. RPL26 RPL26 337.08 2713.27
38. EIF1 ENSGALG00000028517 322.30 2594.30 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
39. RPS4 RPS4 314.61 2532.40
40. MIF ENSGALG00000006326 308.10 2480.00 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
41. MT-ND2 MT-ND2 305.15 2456.25
42. RPS16 ENSGALG00000026490 303.96 2446.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPS15 ENSGALG00000015195 299.82 2413.35 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
44. LDHB ENSGALG00000035836 298.05 2399.10 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. RAN ENSGALG00000002569 295.09 2375.28 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. ATP5G3 292.14 2351.53 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. RPS10 ENSGALG00000002813 283.27 2280.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. RPL31 ENSGALG00000016775 282.67 2275.31 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
49. SNRPG ENSGALG00000028409 278.54 2242.06 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
50. H2AFZ ENSGALG00000014023 276.17 2222.98 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. RPS29 ENSGALG00000012229 274.99 2213.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
52. RPS20 ENSGALG00000014432 272.03 2189.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
53. FKBP4 ENSGALG00000014331 267.30 2151.59 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
54. RPL32 ENSGALG00000027142 267.30 2151.59 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. ANP32B ENSGALG00000037483 264.93 2132.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. H3-IX H3-IX 260.20 2094.44
57. SLC25A6_1 ENSGALG00000016691 256.06 2061.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. HMGN5 ENSGALG00000007131 255.47 2056.36 high mobility group nucleosome binding domain 5, transcript variant X1
59. RPS11 ENSGALG00000017299 253.11 2037.37 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. TXN ENSGALG00000015704 248.38 1999.29 thioredoxin [Source:NCBI gene;Acc:396437]
61. RPS8 ENSGALG00000010124 242.46 1951.64 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
62. RPL36 ENSGALG00000000474 241.87 1946.89 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. RPL37 ENSGALG00000014833 239.50 1927.82 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. EEF1B2 ENSGALG00000008590 236.55 1904.07 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. ERH ENSGALG00000017384 235.37 1894.57 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 234.18 1884.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPSA 233.59 1880.24 ribosomal protein SA
68. RPL21 ENSGALG00000027035 230.63 1856.42 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. RPS14 ENSGALG00000004588 229.45 1846.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. ENSGALG00000018384 ENSGALG00000018384 228.27 1837.42
71. NDUFB9 ENSGALG00000042242 228.27 1837.42 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
72. RPS12 ENSGALG00000013990 227.09 1827.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
73. RPL38 ENSGALG00000001465 224.72 1808.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. ACTC1 ENSGALG00000009844 222.95 1794.60 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
75. HNRNPDL ENSGALG00000023199 222.95 1794.60 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
76. RPS24 ENSGALG00000004871 221.76 1785.02 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. HMGN2 HMGN2 218.22 1756.53
78. RPL14 ENSGALG00000043379 217.62 1751.70 ribosomal protein L14
79. ENSGALG00000028992 ENSGALG00000028992 217.03 1746.95
80. EIF3F ENSGALG00000005326 216.44 1742.20 eukaryotic translation initiation factor 3 subunit F
81. RPLP1 ENSGALG00000030878 215.26 1732.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
82. RPL10A ENSGALG00000002644 214.08 1723.20 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. CRHOA CRHOA 211.12 1699.38
84. BTF3L4 ENSGALG00000010570 209.94 1689.88 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
85. RPL12 ENSGALG00000008806 205.80 1656.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. RPL27 ENSGALG00000002837 204.61 1646.97 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
87. RPS15A ENSGALG00000006771 198.11 1594.65 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
88. SNRPE ENSGALG00000000137 194.56 1566.08 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
89. CDK1 ENSGALG00000003085 193.97 1561.33 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
90. KPNA2 ENSGALG00000003584 193.38 1556.58 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
91. TPT1 ENSGALG00000028872 188.65 1518.51 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
92. RPL23A ENSGALG00000003966 188.06 1513.76 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
93. RPL4 ENSGALG00000007711 188.06 1513.76 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
94. COX7C ENSGALG00000027963 186.28 1499.43 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
95. RPL29 ENSGALG00000026978 185.10 1489.93 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. IGF2BP3 ENSGALG00000010961 182.73 1470.86 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. HNRNPA3 ENSGALG00000009250 181.55 1461.36 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
98. EIF5A2 ENSGALG00000009309 178.00 1432.78 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
99. CALM CALM 172.68 1389.96
100. NONO ENSGALG00000005507 172.09 1385.21 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA