Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s15.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4617.77 37167.89
2. MT-ATP6 MT-ATP6 4269.83 34367.36
3. MT-ND5 MT-ND5 3386.31 27256.01
4. MT-CYB MT-CYB 1981.26 15946.93
5. gga-mir-3527 gga-mir-3527 1673.95 13473.43
6. MT-CO1 MT-CO1 1620.76 13045.31
7. GAPDH ENSGALG00000014442 1617.81 13021.56 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. EEF1A EEF1A 1614.85 12997.74
9. gga-mir-3533 ENSGALG00000027736 1540.24 12397.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. PPIA ENSGALG00000028600 1458.98 11743.16 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. MT-ND4 MT-ND4 1352.60 10886.92
12. MT-ND1 MT-ND1 1188.61 9566.98
13. MT-ND3 MT-ND3 1067.46 8591.86
14. NME2 ENSGALG00000002932 975.86 7854.58 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 768.27 6183.72 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 755.72 6082.70 ribosomal protein S23
17. CRABP-I ENSGALG00000003193 613.14 4935.09 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
18. ENO1 ENSGALG00000002377 556.26 4477.27 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. RPS6 ENSGALG00000015082 534.84 4304.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. TMSB4X ENSGALG00000026383 511.94 4120.55 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL15 ENSGALG00000011290 508.24 4090.76 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL18A 482.39 3882.70 ribosomal protein L18a
23. RPL8 ENSGALG00000016232 472.78 3805.35 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. ENSGALG00000002696 ENSGALG00000002696 463.18 3728.08
25. RPS7 ENSGALG00000016392 452.84 3644.86 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPS3 ENSGALG00000017330 447.67 3603.24 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. ATP6V0C ENSGALG00000009229 442.50 3561.63 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. STMN1 ENSGALG00000001475 441.76 3555.67 stathmin 1 [Source:NCBI gene;Acc:396057]
29. CIRBP ENSGALG00000030918 429.20 3454.58 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. EIF4G2 ENSGALG00000005587 415.16 3341.57 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. RPL7 ENSGALG00000035252 414.42 3335.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
32. RPL27A ENSGALG00000005948 408.51 3288.05 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL7A ENSGALG00000003197 396.70 3192.99 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL23 ENSGALG00000001634 390.05 3139.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. RPL26 RPL26 390.05 3139.47
36. RPS11 ENSGALG00000017299 383.40 3085.94 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
37. RPS27A ENSGALG00000036790 358.28 2883.75 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS4 RPS4 347.20 2794.57
39. RPS16 ENSGALG00000026490 339.07 2729.13 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. FKBP4 ENSGALG00000014331 337.60 2717.30 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
41. LDHB ENSGALG00000035836 336.12 2705.39 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
42. RPL31 ENSGALG00000016775 334.64 2693.48 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RPS10 ENSGALG00000002813 319.87 2574.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
44. RPL38 ENSGALG00000001465 313.96 2527.03 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. ATP5G3 311.74 2509.16 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
46. MDK ENSGALG00000008367 303.62 2443.80 midkine [Source:NCBI gene;Acc:423196]
47. RAN ENSGALG00000002569 303.62 2443.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
48. RPL35A ENSGALG00000007611, ENSGALG00000041230 299.18 2408.06 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
49. EIF1 ENSGALG00000028517 297.71 2396.23 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. SNRPG ENSGALG00000028409 293.27 2360.50 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. RPS20 ENSGALG00000014432 283.67 2283.23 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
52. RPL36 ENSGALG00000000474 280.72 2259.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. MIF ENSGALG00000006326 275.54 2217.79 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
54. NDUFB9 ENSGALG00000042242 269.63 2170.22 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
55. SLC25A6_1 ENSGALG00000016691 267.42 2152.43 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. HMGN5 ENSGALG00000007131 265.20 2134.56 high mobility group nucleosome binding domain 5, transcript variant X1
57. EEF1B2 ENSGALG00000008590 261.51 2104.86 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
58. RPL32 ENSGALG00000027142 261.51 2104.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. H3-IX H3-IX 258.55 2081.04
60. TXN ENSGALG00000015704 258.55 2081.04 thioredoxin [Source:NCBI gene;Acc:396437]
61. ANP32B ENSGALG00000037483 257.81 2075.08 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. MT-ND2 MT-ND2 256.34 2063.25
63. RPS24 ENSGALG00000004871 249.69 2009.73 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. H2AFZ ENSGALG00000014023 246.00 1980.03 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. RPL37 ENSGALG00000014833 243.78 1962.16 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPS12 ENSGALG00000013990 242.30 1950.24 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
67. RPS14 ENSGALG00000004588 237.87 1914.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS15A ENSGALG00000006771 237.13 1908.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. RPSA 234.91 1890.76 ribosomal protein SA
70. RPL14 ENSGALG00000043379 233.44 1878.93 ribosomal protein L14
71. RPL21 ENSGALG00000027035 233.44 1878.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPS29 ENSGALG00000012229 231.22 1861.06 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. RPL23A ENSGALG00000003966 230.48 1855.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
74. RPS15 ENSGALG00000015195 230.48 1855.11 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
75. CRHOA CRHOA 229.00 1843.19
76. RPLP1 ENSGALG00000030878 222.36 1789.75 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
77. CDK1 ENSGALG00000003085 217.92 1754.01 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
78. RPL27 ENSGALG00000002837 217.92 1754.01 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
79. RPS8 ENSGALG00000010124 217.92 1754.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
80. HNRNPA3 ENSGALG00000009250 217.19 1748.14 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
81. RPL29 ENSGALG00000026978 217.19 1748.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
82. ENSGALG00000018386 ENSGALG00000018386 216.45 1742.18
83. IGF2BP3 ENSGALG00000010961 216.45 1742.18 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. ERH ENSGALG00000017384 214.97 1730.27 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
85. KPNA2 ENSGALG00000003584 214.23 1724.31 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
86. ENSGALG00000018384 ENSGALG00000018384 209.80 1688.66
87. SNRPE ENSGALG00000000137 209.80 1688.66 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. EIF3F ENSGALG00000005326 209.06 1682.70 eukaryotic translation initiation factor 3 subunit F
89. ENSGALG00000028992 ENSGALG00000028992 208.32 1676.74
90. HMGN2 HMGN2 205.37 1653.00
91. SLC25A6 ENSGALG00000016691 205.37 1653.00 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
92. HNRNPDL ENSGALG00000023199 200.19 1611.31 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. RPL10A ENSGALG00000002644 197.98 1593.52 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RPL12 ENSGALG00000008806 197.98 1593.52 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. EIF5A2 ENSGALG00000009309 197.24 1587.56 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
96. BTF3L4 ENSGALG00000010570 191.33 1539.99 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
97. ACTC1 ENSGALG00000009844 190.59 1534.04 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
98. RPL4 ENSGALG00000007711 188.37 1516.17 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
99. RPS3A ENSGALG00000010077 175.08 1409.20 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
100. MARCKSL1 ENSGALG00000032335 172.86 1391.33 MARCKS like 1 [Source:NCBI gene;Acc:770764]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA