Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s14.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4990.08 40164.19
2. MT-CO3 MT-CO3 4828.64 38864.79
3. MT-ND5 MT-ND5 4740.61 38156.25
4. gga-mir-3527 gga-mir-3527 2564.89 20644.30
5. MT-CYB MT-CYB 2188.55 17615.22
6. MT-CO1 MT-CO1 1860.68 14976.25
7. MT-ND4 MT-ND4 1659.32 13355.55
8. EEF1A EEF1A 1493.60 12021.70
9. gga-mir-3533 ENSGALG00000027736 1381.70 11121.04 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1353.54 10894.38
11. GAPDH ENSGALG00000014442 1251.97 10076.86 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1119.76 9012.73 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 1045.63 8416.07
14. NME2 ENSGALG00000002932 895.23 7205.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 643.63 5180.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 614.76 4948.08 ribosomal protein S23
17. CRABP-I ENSGALG00000003193 565.58 4552.24 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
18. RPS6 ENSGALG00000015082 542.06 4362.94 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. ENO1 ENSGALG00000002377 526.38 4236.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. TMSB4X ENSGALG00000026383 490.38 3946.97 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. RPL15 ENSGALG00000011290 490.03 3944.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS3 ENSGALG00000017330 457.95 3685.95 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
23. STMN1 ENSGALG00000001475 445.48 3585.58 stathmin 1 [Source:NCBI gene;Acc:396057]
24. ATP6V0C ENSGALG00000009229 441.92 3556.93 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. CIRBP ENSGALG00000030918 437.28 3519.58 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPS7 ENSGALG00000016392 437.28 3519.58 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. EIF4G2 ENSGALG00000005587 427.66 3442.15 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPL8 ENSGALG00000016232 416.26 3350.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL26 RPL26 403.07 3244.23
30. RPL7 ENSGALG00000035252 396.65 3192.56 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
31. RPL23 ENSGALG00000001634 386.68 3112.31 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL27A ENSGALG00000005948 386.32 3109.41 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL18A 382.04 3074.97 ribosomal protein L18a
34. ENSGALG00000002696 ENSGALG00000002696 364.22 2931.54
35. RPL7A ENSGALG00000003197 361.73 2911.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS20 ENSGALG00000014432 344.27 2770.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
37. RPS10 ENSGALG00000002813 330.01 2656.19 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
38. RPS27A ENSGALG00000036790 318.61 2564.43 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. RAN ENSGALG00000002569 304.35 2449.65 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. LDHB ENSGALG00000035836 301.50 2426.72 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. EIF1 ENSGALG00000028517 295.09 2375.12 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
42. RPS11 ENSGALG00000017299 292.59 2355.00 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. FKBP4 ENSGALG00000014331 286.18 2303.41 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. RPL31 ENSGALG00000016775 283.68 2283.29 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. HMGN5 ENSGALG00000007131 281.54 2266.06 high mobility group nucleosome binding domain 5, transcript variant X1
46. SLC25A6_1 ENSGALG00000016691 271.92 2188.63 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. RPS16 ENSGALG00000026490 271.21 2182.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. SNRPG ENSGALG00000028409 270.14 2174.30 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
49. ATP5G3 269.07 2165.69 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. H2AFZ ENSGALG00000014023 260.87 2099.69 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. RPS4 RPS4 260.52 2096.88
52. MT-ND2 MT-ND2 259.80 2091.08
53. MDK ENSGALG00000008367 256.24 2062.43 midkine [Source:NCBI gene;Acc:423196]
54. MIF ENSGALG00000006326 255.88 2059.53 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
55. RPL36 ENSGALG00000000474 248.40 1999.32 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPS12 ENSGALG00000013990 248.04 1996.43 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. RPS29 ENSGALG00000012229 246.26 1982.10 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
58. RPS24 ENSGALG00000004871 245.19 1973.49 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
59. EEF1B2 ENSGALG00000008590 241.63 1944.83 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
60. RPL37 ENSGALG00000014833 239.85 1930.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 239.49 1927.61 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. H3-IX H3-IX 233.07 1875.94
63. ERH ENSGALG00000017384 232.01 1867.40 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. ANP32B ENSGALG00000037483 230.58 1855.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. TXN ENSGALG00000015704 230.58 1855.89 thioredoxin [Source:NCBI gene;Acc:396437]
66. NDUFB9 ENSGALG00000042242 226.30 1821.44 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
67. ENSGALG00000028992 ENSGALG00000028992 225.95 1818.63
68. EIF3F ENSGALG00000005326 222.74 1792.79 eukaryotic translation initiation factor 3 subunit F
69. RPL27 ENSGALG00000002837 222.38 1789.89 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
70. HNRNPDL ENSGALG00000023199 219.89 1769.85 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPSA 219.89 1769.85 ribosomal protein SA
72. RPL23A ENSGALG00000003966 215.97 1738.30 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. RPS8 ENSGALG00000010124 212.76 1712.46 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
74. RPL21 ENSGALG00000027035 212.05 1706.75 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
75. RPLP1 ENSGALG00000030878 211.69 1703.85 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
76. CRHOA CRHOA 209.91 1689.53
77. RPS15 ENSGALG00000015195 208.13 1675.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
78. RPL38 ENSGALG00000001465 206.70 1663.69 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. BTF3L4 ENSGALG00000010570 205.99 1657.97 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
80. HMGN2 HMGN2 201.36 1620.71
81. CDK1 ENSGALG00000003085 201.00 1617.81 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
82. RPL32 ENSGALG00000027142 200.64 1614.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
83. RPS14 ENSGALG00000004588 200.64 1614.91 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
84. IGF2BP3 ENSGALG00000010961 199.93 1609.20 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
85. SNRPE ENSGALG00000000137 199.57 1606.30 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
86. RPL14 ENSGALG00000043379 198.86 1600.59 ribosomal protein L14
87. NONO ENSGALG00000005507 197.79 1591.97 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
88. RPS3A ENSGALG00000010077 196.01 1577.65 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
89. KPNA2 ENSGALG00000003584 194.59 1566.22 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
90. RPL12 ENSGALG00000008806 194.23 1563.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. RPL10A ENSGALG00000002644 193.52 1557.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. HNRNPA3 ENSGALG00000009250 188.53 1517.44 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
93. RPS21 ENSGALG00000005338 187.10 1505.93 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
94. TPT1 ENSGALG00000028872 184.96 1488.71 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
95. RPL29 ENSGALG00000026978 184.25 1482.99 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. ENSGALG00000018384 ENSGALG00000018384 181.40 1460.05
97. RPS15A ENSGALG00000006771 180.69 1454.34 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
98. PRDX1 ENSGALG00000010243 173.56 1396.95 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. RPL4 ENSGALG00000007711 173.20 1394.05 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
100. CALM CALM 172.13 1385.44
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA