Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s12.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5435.63 43753.27
2. MT-CO3 MT-CO3 4520.34 36385.78
3. MT-ND5 MT-ND5 4453.22 35845.51
4. MT-CYB MT-CYB 2681.20 21581.91
5. MT-CO1 MT-CO1 1925.78 15501.27
6. gga-mir-3527 gga-mir-3527 1877.58 15113.29
7. MT-ND4 MT-ND4 1823.27 14676.13
8. EEF1A EEF1A 1653.02 13305.73
9. gga-mir-3533 ENSGALG00000027736 1515.73 12200.63 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 1505.97 12122.07 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1410.77 11355.78
12. PPIA ENSGALG00000028600 1127.03 9071.85 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 1114.22 8968.74
14. NME2 ENSGALG00000002932 928.72 7475.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPS23 ENSGALG00000015617 676.71 5447.07 ribosomal protein S23
16. RPL5 ENSGALG00000005922 629.11 5063.92 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. TMSB4X ENSGALG00000026383 523.55 4214.23 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPS6 ENSGALG00000015082 503.41 4052.12 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. CRABP-I ENSGALG00000003193 496.09 3993.20 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
20. RPL15 ENSGALG00000011290 463.14 3727.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. ATP6V0C ENSGALG00000009229 460.70 3708.33 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
22. ENO1 ENSGALG00000002377 459.48 3698.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS3 ENSGALG00000017330 457.65 3683.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL8 ENSGALG00000016232 446.05 3590.41 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. STMN1 ENSGALG00000001475 431.41 3472.57 stathmin 1 [Source:NCBI gene;Acc:396057]
26. MDK ENSGALG00000008367 426.53 3433.29 midkine [Source:NCBI gene;Acc:423196]
27. CIRBP ENSGALG00000030918 413.10 3325.18 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. EIF4G2 ENSGALG00000005587 411.88 3315.36 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
29. RPS7 ENSGALG00000016392 387.47 3118.88 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
30. RPL7A ENSGALG00000003197 377.71 3040.32 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. MT-ND2 MT-ND2 363.68 2927.39
32. RPL23 ENSGALG00000001634 361.85 2912.66 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
33. RPL26 RPL26 361.24 2907.75
34. RPL7 ENSGALG00000035252 360.02 2897.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
35. RPS4 RPS4 358.19 2883.20
36. ENSGALG00000002696 ENSGALG00000002696 353.30 2843.83
37. RPL18A 336.83 2711.26 ribosomal protein L18a
38. RPS27A ENSGALG00000036790 322.18 2593.34 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. EIF1 ENSGALG00000028517 316.08 2544.24 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
40. ANP32B ENSGALG00000037483 313.03 2519.69 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
41. RPL27A ENSGALG00000005948 299.00 2406.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. LDHB ENSGALG00000035836 280.08 2254.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
43. RPS12 ENSGALG00000013990 275.20 2215.18 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. RPL31 ENSGALG00000016775 269.71 2170.99 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
45. RAN ENSGALG00000002569 268.49 2161.17 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. RPS10 ENSGALG00000002813 268.49 2161.17 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
47. ATP5G3 267.27 2151.35 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. RPS20 ENSGALG00000014432 266.05 2141.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. RPS16 ENSGALG00000026490 265.44 2136.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. NDUFB9 ENSGALG00000042242 262.38 2111.99 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
51. SNRPG ENSGALG00000028409 256.89 2067.80 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
52. HMGN5 ENSGALG00000007131 252.62 2033.43 high mobility group nucleosome binding domain 5, transcript variant X1
53. RPL32 ENSGALG00000027142 252.62 2033.43 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. FKBP4 ENSGALG00000014331 250.79 2018.70 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. HNRNPDL ENSGALG00000023199 247.13 1989.23 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
56. H2AFZ ENSGALG00000014023 242.25 1949.95 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. EEF1B2 ENSGALG00000008590 241.64 1945.04 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
58. RPL21 ENSGALG00000027035 241.64 1945.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. MEIS2 ENSGALG00000039118 241.03 1940.13 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
60. ENSGALG00000018384 ENSGALG00000018384 238.59 1920.49
61. TXN ENSGALG00000015704 236.76 1905.76 thioredoxin [Source:NCBI gene;Acc:396437]
62. MIF ENSGALG00000006326 235.54 1895.94 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
63. ERH ENSGALG00000017384 226.99 1827.12 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. EIF3F ENSGALG00000005326 226.38 1822.21 eukaryotic translation initiation factor 3 subunit F
65. ENSGALG00000018386 ENSGALG00000018386 225.16 1812.39
66. IGF2BP3 ENSGALG00000010961 225.16 1812.39 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
67. ENSGALG00000028992 ENSGALG00000028992 223.94 1802.57
68. EIF5A2 ENSGALG00000009309 222.72 1792.75 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
69. RPLP1 ENSGALG00000030878 222.11 1787.84 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. RPS29 ENSGALG00000012229 222.11 1787.84 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
71. RPL36 ENSGALG00000000474 220.89 1778.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. HNRNPA3 ENSGALG00000009250 218.45 1758.38 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
73. SLC25A6_1 ENSGALG00000016691 217.23 1748.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
74. H3-IX H3-IX 213.57 1719.10
75. RPS15 ENSGALG00000015195 213.57 1719.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
76. RPSA 213.57 1719.10 ribosomal protein SA
77. RPS14 ENSGALG00000004588 211.74 1704.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS24 ENSGALG00000004871 210.52 1694.55 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
79. RPL35A ENSGALG00000007611, ENSGALG00000041230 209.30 1684.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
80. CRHOA CRHOA 207.47 1670.00
81. BTF3L4 ENSGALG00000010570 206.86 1665.09 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
82. RPS8 ENSGALG00000010124 206.86 1665.09 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
83. RPL10A ENSGALG00000002644 205.64 1655.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. RPS11 ENSGALG00000017299 202.59 1630.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
85. RPS15A ENSGALG00000006771 201.36 1620.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
86. RPL12 ENSGALG00000008806 199.53 1606.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
87. RPL37 ENSGALG00000014833 199.53 1606.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
88. NONO ENSGALG00000005507 197.09 1586.45 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
89. KPNA2 ENSGALG00000003584 196.48 1581.54 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
90. HMGN2 HMGN2 195.87 1576.63
91. RPL27 ENSGALG00000002837 194.65 1566.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
92. RPL29 ENSGALG00000026978 192.21 1547.16 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
93. RPL38 ENSGALG00000001465 187.33 1507.88 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. SNRPE ENSGALG00000000137 185.50 1493.15 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
95. RPL6 ENSGALG00000004818 184.89 1488.24 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
96. TPT1 ENSGALG00000028872 183.67 1478.42 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
97. COX7C ENSGALG00000027963 175.74 1414.59 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
98. RPL4 ENSGALG00000007711 175.13 1409.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
99. RPL14 ENSGALG00000043379 170.24 1370.32 ribosomal protein L14
100. PNRC1 ENSGALG00000015780 169.63 1365.41 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA