Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s10.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4878.70 39270.02
2. MT-CO3 MT-CO3 4622.29 37206.10
3. MT-ND5 MT-ND5 4363.13 35120.05
4. MT-CYB MT-CYB 2340.62 18840.30
5. gga-mir-3527 gga-mir-3527 2192.54 17648.37
6. MT-ND4 MT-ND4 1952.58 15716.86
7. MT-CO1 MT-CO1 1757.87 14149.59
8. EEF1A EEF1A 1526.14 12284.33
9. GAPDH ENSGALG00000014442 1428.78 11500.65 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND1 MT-ND1 1254.64 10098.95
11. gga-mir-3533 ENSGALG00000027736 1208.02 9723.69 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1083.24 8719.30
13. PPIA ENSGALG00000028600 1070.90 8619.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 852.88 6865.07 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 645.83 5198.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS23 ENSGALG00000015617 590.98 4756.96 ribosomal protein S23
17. RPS6 ENSGALG00000015082 519.68 4183.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. TMSB4X ENSGALG00000026383 514.20 4138.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. ENO1 ENSGALG00000002377 501.86 4039.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
20. RPL8 ENSGALG00000016232 501.86 4039.61 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. ATP6V0C ENSGALG00000009229 492.26 3962.34 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
22. EIF4G2 ENSGALG00000005587 484.03 3896.09 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPS7 ENSGALG00000016392 479.92 3863.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. CRABP-I ENSGALG00000003193 468.95 3774.71 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
25. RPL15 ENSGALG00000011290 467.58 3763.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. CIRBP ENSGALG00000030918 449.75 3620.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. STMN1 ENSGALG00000001475 431.93 3476.73 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPS3 ENSGALG00000017330 420.96 3388.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
29. RPL23 ENSGALG00000001634 416.84 3355.26 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL27A ENSGALG00000005948 401.76 3233.88 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPL7A ENSGALG00000003197 397.65 3200.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. ENSGALG00000002696 ENSGALG00000002696 390.79 3145.58
33. RPL26 RPL26 378.45 3046.25
34. RPL18A 364.74 2935.89 ribosomal protein L18a
35. RPL7 ENSGALG00000035252 364.74 2935.89 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. MDK ENSGALG00000008367 324.97 2615.77 midkine [Source:NCBI gene;Acc:423196]
37. RPL31 ENSGALG00000016775 318.12 2560.64 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. RPS10 ENSGALG00000002813 316.75 2549.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. RPS27A ENSGALG00000036790 315.37 2538.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. LDHB ENSGALG00000035836 308.52 2483.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. RPS20 ENSGALG00000014432 307.15 2472.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. EIF1 ENSGALG00000028517 304.40 2450.20 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
43. MT-ND2 MT-ND2 290.69 2339.85
44. RPS11 ENSGALG00000017299 287.95 2317.79 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. RAN ENSGALG00000002569 283.84 2284.71 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
46. RPS4 RPS4 282.47 2273.68
47. SNRPG ENSGALG00000028409 281.09 2262.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
48. RPL37 ENSGALG00000014833 278.35 2240.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
49. RPS16 ENSGALG00000026490 268.75 2163.24 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. ENSGALG00000028992 ENSGALG00000028992 267.38 2152.22
51. EEF1B2 ENSGALG00000008590 264.64 2130.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPL35A ENSGALG00000007611, ENSGALG00000041230 259.16 2086.05 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
53. HMGN5 ENSGALG00000007131 256.41 2063.92 high mobility group nucleosome binding domain 5, transcript variant X1
54. ATP5G3 253.67 2041.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
55. SLC25A6_1 ENSGALG00000016691 250.93 2019.81 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. RPS15A ENSGALG00000006771 245.44 1975.62 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
57. RPS12 ENSGALG00000013990 244.07 1964.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. CRHOA CRHOA 241.33 1942.53
59. ANP32B ENSGALG00000037483 235.84 1898.34 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. RPL32 ENSGALG00000027142 235.84 1898.34 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. H3-IX H3-IX 230.36 1854.23
62. ENSGALG00000018384 ENSGALG00000018384 226.25 1821.15
63. ERH ENSGALG00000017384 226.25 1821.15 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
64. RPS29 ENSGALG00000012229 224.88 1810.12 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
65. RPS14 ENSGALG00000004588 222.13 1787.99 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPS15 ENSGALG00000015195 222.13 1787.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. RPL21 ENSGALG00000027035 220.76 1776.96 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. RPSA 219.39 1765.93 ribosomal protein SA
69. H2AFZ ENSGALG00000014023 218.02 1754.90 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
70. MIF ENSGALG00000006326 218.02 1754.90 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. RPS8 ENSGALG00000010124 216.65 1743.88 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
72. RPS3A ENSGALG00000010077 215.28 1732.85 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. NDUFB9 ENSGALG00000042242 213.91 1721.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
74. RPL14 ENSGALG00000043379 212.53 1710.71 ribosomal protein L14
75. RPL36 ENSGALG00000000474 212.53 1710.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. SNRPE ENSGALG00000000137 211.16 1699.69 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. EIF3F ENSGALG00000005326 209.79 1688.66 eukaryotic translation initiation factor 3 subunit F
78. RPL23A ENSGALG00000003966 204.31 1644.55 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
79. RPL38 ENSGALG00000001465 204.31 1644.55 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. BTF3L4 ENSGALG00000010570 201.57 1622.49 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
81. HNRNPA3 ENSGALG00000009250 200.19 1611.39 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
82. RPL10A ENSGALG00000002644 200.19 1611.39 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. IGF2BP3 ENSGALG00000010961 198.82 1600.36 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. KPNA2 ENSGALG00000003584 198.82 1600.36 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
85. COX7C ENSGALG00000027963 196.08 1578.30 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
86. RPL27 ENSGALG00000002837 191.97 1545.22 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
87. RPS24 ENSGALG00000004871 191.97 1545.22 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
88. HMGN2 HMGN2 187.85 1512.06
89. RPS21 ENSGALG00000005338 187.85 1512.06 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
90. TXN ENSGALG00000015704 187.85 1512.06 thioredoxin [Source:NCBI gene;Acc:396437]
91. RPL12 ENSGALG00000008806 185.11 1490.00 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
92. HNRNPDL ENSGALG00000023199 183.74 1478.97 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. RPLP1 ENSGALG00000030878 183.74 1478.97 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
94. PNRC1 ENSGALG00000015780 182.37 1467.95 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
95. TCF12 ENSGALG00000004304 179.63 1445.89 transcription factor 12 [Source:NCBI gene;Acc:396334]
96. CALM CALM 178.25 1434.78
97. RPL29 ENSGALG00000026978 178.25 1434.78 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
98. RPL3 ENSGALG00000012172 178.25 1434.78 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. ENSGALG00000018386 ENSGALG00000018386 172.77 1390.67
100. RPL6 ENSGALG00000004818 170.03 1368.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA