Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s9.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3617.38 29116.34
2. MT-ATP6 MT-ATP6 1116.23 8984.55
3. RPLP0 ENSGALG00000023294 1097.57 8834.36 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPLP1 ENSGALG00000030878 1019.21 8203.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1001.48 8060.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS23 ENSGALG00000015617 999.62 8045.96 ribosomal protein S23
7. EEF1A EEF1A 995.42 8012.15
8. RPS10 ENSGALG00000002813 984.69 7925.78 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. MT-ND5 MT-ND5 932.91 7509.01
10. RPS8 ENSGALG00000010124 908.19 7310.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. RPL4 ENSGALG00000007711 837.76 6743.14 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPS15 ENSGALG00000015195 820.96 6607.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. RPS28 ENSGALG00000024398 814.90 6559.14 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. GAPDH ENSGALG00000014442 785.05 6318.88 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. gga-mir-3533 ENSGALG00000027736 765.92 6164.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. RPL23A ENSGALG00000003966 754.73 6074.83 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. RPL27A ENSGALG00000005948 747.73 6018.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPL13 ENSGALG00000006179 730.94 5883.35 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. gga-mir-3527 gga-mir-3527 726.74 5849.54
20. RPS12 ENSGALG00000013990 716.01 5763.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL32 ENSGALG00000027142 698.75 5624.25 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
22. RPL27 ENSGALG00000002837 670.77 5399.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPL38 ENSGALG00000001465 646.98 5207.55 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
24. MT-CYB MT-CYB 645.11 5192.50
25. RPL8 ENSGALG00000016232 618.06 4974.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPS2 ENSGALG00000005490 608.26 4895.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. RPS29 ENSGALG00000012229 601.73 4843.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. RPL29 ENSGALG00000026978 596.13 4798.26 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
29. RPL26 RPL26 592.87 4772.02
30. RPL7A ENSGALG00000003197 586.34 4719.46 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS21 ENSGALG00000005338 570.94 4595.50 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPS15A ENSGALG00000006771 565.35 4550.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. TMSB4X ENSGALG00000026383 549.49 4422.85 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPS4 RPS4 538.76 4336.49
35. RPSA 532.69 4287.63 ribosomal protein SA
36. MT-ND4 MT-ND4 530.83 4272.66
37. RPS16 ENSGALG00000026490 520.57 4190.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. SNRPD1 ENSGALG00000041334 519.63 4182.51 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. RPL14 ENSGALG00000043379 514.50 4141.22 ribosomal protein L14
40. RPL35 ENSGALG00000035677 511.70 4118.68 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPL15 ENSGALG00000011290 508.44 4092.44 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPS11 ENSGALG00000017299 505.64 4069.90 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPL21 ENSGALG00000027035 496.78 3998.59 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPL36 ENSGALG00000000474 496.78 3998.59 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. MT-CO1 MT-CO1 485.12 3904.74
46. RPS3A ENSGALG00000010077 482.78 3885.90 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
47. RPL19 ENSGALG00000001658 480.92 3870.93 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
48. RPL36AL ENSGALG00000004952 476.25 3833.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
49. RPL18A 473.92 3814.59 ribosomal protein L18a
50. RPL24 ENSGALG00000015339 452.00 3638.15 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
51. PPIA ENSGALG00000028600 444.07 3574.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
52. RPS6 ENSGALG00000015082 431.47 3472.91 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
53. TCEB3 ENSGALG00000034625 418.88 3371.57 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
54. RPS14 ENSGALG00000004588 406.28 3270.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. RPS7 ENSGALG00000016392 406.28 3270.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. MT-ND3 MT-ND3 405.82 3266.45
57. ENO1 ENSGALG00000002377 402.55 3240.13 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
58. NME2 ENSGALG00000002932 397.42 3198.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. RPL12 ENSGALG00000008806 396.49 3191.35 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
60. RPS27A ENSGALG00000036790 387.63 3120.04 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. RPL5 ENSGALG00000005922 377.36 3037.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
62. RPL37 ENSGALG00000014833 375.96 3026.11 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. ENSGALG00000028992 ENSGALG00000028992 368.03 2962.28
64. RPS13 ENSGALG00000006096 362.90 2920.99 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. TXN ENSGALG00000015704 355.44 2860.94 thioredoxin [Source:NCBI gene;Acc:396437]
66. CIRBP ENSGALG00000030918 354.51 2853.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
67. RAN ENSGALG00000002569 349.38 2812.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
68. RPL6 ENSGALG00000004818 346.58 2789.63 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. MT-ND1 MT-ND1 344.25 2770.87
70. RPS20 ENSGALG00000014432 333.05 2680.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
71. RPL23 ENSGALG00000001634 327.45 2635.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
72. STMN1 ENSGALG00000001475 323.72 2605.63 stathmin 1 [Source:NCBI gene;Acc:396057]
73. RPS25 ENSGALG00000007699 314.86 2534.31 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. MT-ND6 MT-ND6 312.99 2519.26
75. RPLP2 ENSGALG00000034811 312.06 2511.78 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
76. ANP32B ENSGALG00000037483 311.59 2507.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. GNB2L1 ENSGALG00000000122 308.33 2481.75 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
78. ENSGALG00000002696 ENSGALG00000002696 304.13 2447.95
79. ALDOC ENSGALG00000026077 303.20 2440.46 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
80. RPL7 ENSGALG00000035252 301.33 2425.41 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
81. RPL37A ENSGALG00000011472 299.93 2414.14 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
82. UBB ENSGALG00000004509 276.61 2226.44 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. HMGN2 HMGN2 275.21 2215.17
84. EIF5A2 ENSGALG00000009309 274.74 2211.39 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. ENSGALG00000018384 ENSGALG00000018384 266.81 2147.56
86. RPL10A ENSGALG00000002644 265.41 2136.29 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. LDHB ENSGALG00000035836 261.22 2102.56 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. PRDX1 ENSGALG00000010243 260.75 2098.78 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. MDK ENSGALG00000008367 256.55 2064.97 midkine [Source:NCBI gene;Acc:423196]
90. RPL31 ENSGALG00000016775 250.95 2019.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
91. ENSGALG00000028649 ENSGALG00000028649 248.62 2001.15
92. PKM ENSGALG00000001992 246.76 1986.17 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
93. HSPA8 ENSGALG00000006512 233.23 1877.27 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. HMGN5 ENSGALG00000007131 228.10 1835.98 high mobility group nucleosome binding domain 5, transcript variant X1
95. EEF1D 227.16 1828.41 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. MARCKSL1 ENSGALG00000032335 222.50 1790.91 MARCKS like 1 [Source:NCBI gene;Acc:770764]
97. CRHOA CRHOA 221.10 1779.64
98. DYL1 ENSGALG00000007153 217.84 1753.40 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. H2AFZ ENSGALG00000014023 216.44 1742.13 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
100. SLC25A6_1 ENSGALG00000016691 205.24 1651.98 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA