Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s8.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3094.49 24908.86
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1214.49 9775.95 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. EEF1A EEF1A 1131.13 9104.95
4. RPS10 ENSGALG00000002813 1116.91 8990.48 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. RPLP0 ENSGALG00000023294 1115.97 8982.92 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPLP1 ENSGALG00000030878 1053.92 8483.45 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS23 ENSGALG00000015617 973.39 7835.23 ribosomal protein S23
8. RPL4 ENSGALG00000007711 968.66 7797.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. gga-mir-3533 ENSGALG00000027736 936.45 7537.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ATP6 MT-ATP6 898.08 7229.03
11. RPS28 ENSGALG00000024398 895.71 7209.95 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. RPS8 ENSGALG00000010124 818.03 6584.67 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS12 ENSGALG00000013990 768.77 6188.16 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
14. GAPDH ENSGALG00000014442 745.08 5997.47 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL27 ENSGALG00000002837 728.03 5860.22 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
16. RPL23A ENSGALG00000003966 706.72 5688.69 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. MT-ND5 MT-ND5 705.77 5681.04
18. RPS15 ENSGALG00000015195 694.40 5589.52 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
19. RPL27A ENSGALG00000005948 689.66 5551.37 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. RPL8 ENSGALG00000016232 669.77 5391.26 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL7A ENSGALG00000003197 667.40 5372.19 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL32 ENSGALG00000027142 631.88 5086.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
23. RPSA 606.77 4884.15 ribosomal protein SA
24. RPL13 ENSGALG00000006179 600.61 4834.57 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPL29 ENSGALG00000026978 579.30 4663.03 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. gga-mir-3527 gga-mir-3527 567.93 4571.51
27. TMSB4X ENSGALG00000026383 565.56 4552.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPL26 RPL26 549.46 4422.84
29. RPS29 ENSGALG00000012229 539.51 4342.75 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
30. PPIA ENSGALG00000028600 538.56 4335.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
31. RPL35 ENSGALG00000035677 537.62 4327.53 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
32. RPL15 ENSGALG00000011290 527.20 4243.66 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPS2 ENSGALG00000005490 520.09 4186.43 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
34. RPL38 ENSGALG00000001465 519.62 4182.64 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. RPS11 ENSGALG00000017299 517.72 4167.35 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPL19 ENSGALG00000001658 515.35 4148.27 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPS21 ENSGALG00000005338 515.35 4148.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
38. RPS16 ENSGALG00000026490 512.04 4121.63 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
39. RPS3A ENSGALG00000010077 510.62 4110.20 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. SNRPD1 ENSGALG00000041334 508.25 4091.12 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
41. RPS4 RPS4 507.30 4083.47
42. RPS15A ENSGALG00000006771 506.83 4079.69 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. MT-CYB MT-CYB 503.99 4056.83
44. RPL24 ENSGALG00000015339 479.35 3858.49 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
45. RPS6 ENSGALG00000015082 462.30 3721.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. RPS27A ENSGALG00000036790 453.30 3648.80 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPL21 ENSGALG00000027035 445.72 3587.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. RPL36AL ENSGALG00000004952 444.78 3580.22 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
49. ENO1 ENSGALG00000002377 438.15 3526.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
50. RPL36 ENSGALG00000000474 433.88 3492.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. MT-ND4 MT-ND4 429.15 3454.41
52. RPL14 ENSGALG00000043379 424.41 3416.26 ribosomal protein L14
53. MT-CO1 MT-CO1 417.78 3362.89
54. GNB2L1 ENSGALG00000000122 414.94 3340.03 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPS14 ENSGALG00000004588 409.25 3294.23 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. RPL5 ENSGALG00000005922 408.78 3290.44 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
57. RPL12 ENSGALG00000008806 396.94 3195.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
58. HMGN2 HMGN2 382.73 3080.76
59. NME2 ENSGALG00000002932 375.62 3023.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPS7 ENSGALG00000016392 373.25 3004.45 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
61. ANP32B ENSGALG00000037483 362.83 2920.57 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. TXN ENSGALG00000015704 359.52 2893.93 thioredoxin [Source:NCBI gene;Acc:396437]
63. RPLP2 ENSGALG00000034811 358.57 2886.28 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
64. RPL18A 352.88 2840.48 ribosomal protein L18a
65. RPL23 ENSGALG00000001634 351.46 2829.05 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RAN ENSGALG00000002569 346.25 2787.11 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
67. ALDOC ENSGALG00000026077 342.46 2756.61 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
68. RPS13 ENSGALG00000006096 340.57 2741.39 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. TCEB3 ENSGALG00000034625 335.36 2699.46 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. CIRBP ENSGALG00000030918 328.25 2642.22 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
71. RPL37A ENSGALG00000011472 322.10 2592.72 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
72. MT-ND6 MT-ND6 321.62 2588.86
73. HBZ ENSGALG00000023740 315.94 2543.14 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
74. MT-ND3 MT-ND3 307.89 2478.34
75. RPS25 ENSGALG00000007699 305.04 2455.40 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
76. STMN1 ENSGALG00000001475 304.57 2451.61 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RPL6 ENSGALG00000004818 304.10 2447.83 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
78. ENSGALG00000028992 ENSGALG00000028992 302.68 2436.40
79. RPL37 ENSGALG00000014833 299.36 2409.68 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
80. RPS20 ENSGALG00000014432 299.36 2409.68 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. LDHB ENSGALG00000035836 297.47 2394.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
82. HBG1 HBG1 291.31 2344.88
83. EIF5A2 ENSGALG00000009309 290.83 2341.01 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. MIF ENSGALG00000006326 290.83 2341.01 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
85. MDK ENSGALG00000008367 288.47 2322.02 midkine [Source:NCBI gene;Acc:423196]
86. ENSGALG00000018384 ENSGALG00000018384 287.04 2310.51
87. ENSGALG00000002696 ENSGALG00000002696 281.83 2268.57
88. ENSGALG00000028649 ENSGALG00000028649 269.04 2165.62
89. UBB ENSGALG00000004509 264.31 2127.54 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RPL7 ENSGALG00000035252 258.15 2077.96 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
91. EEF1D 255.78 2058.88 eukaryotic translation elongation factor 1 delta, transcript variant X13
92. PRDX1 ENSGALG00000010243 255.78 2058.88 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. PKM ENSGALG00000001992 250.10 2013.16 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
94. MT-ND1 MT-ND1 248.68 2001.73
95. RPL10A ENSGALG00000002644 238.26 1917.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. DYL1 ENSGALG00000007153 235.89 1898.78 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
97. MARCKSL1 ENSGALG00000032335 233.05 1875.92 MARCKS like 1 [Source:NCBI gene;Acc:770764]
98. HBE 231.15 1860.62 hemoglobin subunit epsilon
99. ATP5G3 230.68 1856.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. RPL31 ENSGALG00000016775 226.89 1826.33 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA