Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s6.

Sample reads: 124,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3293.15 26504.41
2. RPLP0 ENSGALG00000023294 1299.23 10456.65 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1118.16 8999.34 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. MT-ATP6 MT-ATP6 1095.16 8814.23
5. RPLP1 ENSGALG00000030878 1057.56 8511.61 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPL4 ENSGALG00000007711 1000.61 8053.26 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. EEF1A EEF1A 993.31 7994.50
8. RPS10 ENSGALG00000002813 988.93 7959.25 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS28 ENSGALG00000024398 901.32 7254.14 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
10. GAPDH ENSGALG00000014442 835.24 6722.30 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPS23 ENSGALG00000015617 824.29 6634.17 ribosomal protein S23
12. RPS8 ENSGALG00000010124 808.59 6507.81 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. MT-ND5 MT-ND5 794.72 6396.18
14. gga-mir-3533 ENSGALG00000027736 727.92 5858.55 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. RPL27A ENSGALG00000005948 711.85 5729.22 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPL23A ENSGALG00000003966 689.22 5547.08 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. gga-mir-3527 gga-mir-3527 632.27 5088.73
18. RPL27 ENSGALG00000002837 619.50 4985.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
19. RPS12 ENSGALG00000013990 615.12 4950.70 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
20. RPL38 ENSGALG00000001465 597.23 4806.71 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. RPS15 ENSGALG00000015195 594.67 4786.11 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. RPL19 ENSGALG00000001658 590.29 4750.86 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPSA 589.56 4744.98 ribosomal protein SA
24. RPL29 ENSGALG00000026978 584.09 4700.96 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPL13 ENSGALG00000006179 583.72 4697.98 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
26. RPL7A ENSGALG00000003197 582.63 4689.21 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. SNRPD1 ENSGALG00000041334 578.98 4659.83 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
28. RPL32 ENSGALG00000027142 576.42 4639.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
29. RPS21 ENSGALG00000005338 563.28 4533.47 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPL8 ENSGALG00000016232 560.72 4512.87 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
31. PPIA ENSGALG00000028600 556.71 4480.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
32. RPS11 ENSGALG00000017299 542.83 4368.88 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPS4 RPS4 542.47 4365.99
34. RPS29 ENSGALG00000012229 540.28 4348.36 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPS2 ENSGALG00000005490 530.42 4269.00 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. RPL26 RPL26 528.60 4254.36
37. RPL15 ENSGALG00000011290 514.73 4142.73 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
38. TMSB4X ENSGALG00000026383 501.95 4039.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. MT-CYB MT-CYB 496.47 3995.76
40. RPS16 ENSGALG00000026490 495.74 3989.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPS3A ENSGALG00000010077 471.28 3793.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
42. RPL24 ENSGALG00000015339 453.76 3652.02 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
43. RPS15A ENSGALG00000006771 449.75 3619.74 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. ENO1 ENSGALG00000002377 449.38 3616.77 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
45. RPL35 ENSGALG00000035677 443.54 3569.76 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
46. RPL36 ENSGALG00000000474 440.25 3543.28 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
47. RPS6 ENSGALG00000015082 437.33 3519.78 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
48. RPL12 ENSGALG00000008806 424.19 3414.03 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPL21 ENSGALG00000027035 419.08 3372.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPL36AL ENSGALG00000004952 414.34 3334.75 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
51. RPS27A ENSGALG00000036790 410.69 3305.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. MT-ND6 MT-ND6 410.32 3302.40
53. RPL14 ENSGALG00000043379 406.67 3273.02 ribosomal protein L14
54. ANP32B ENSGALG00000037483 404.84 3258.29 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
55. RPS14 ENSGALG00000004588 402.65 3240.67 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. RPS7 ENSGALG00000016392 387.69 3120.26 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. MT-CO1 MT-CO1 371.99 2993.90
58. MT-ND4 MT-ND4 367.24 2955.67
59. NME2 ENSGALG00000002932 363.59 2926.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPL18A 355.20 2858.77 ribosomal protein L18a
61. HMGN2 HMGN2 354.83 2855.79
62. RPS20 ENSGALG00000014432 348.99 2808.79 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
63. RAN ENSGALG00000002569 347.53 2797.04 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
64. RPL5 ENSGALG00000005922 339.86 2735.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPL23 ENSGALG00000001634 331.47 2667.79 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. ENSGALG00000028649 ENSGALG00000028649 330.74 2661.91
67. MDK ENSGALG00000008367 329.28 2650.16 midkine [Source:NCBI gene;Acc:423196]
68. ENSGALG00000028992 ENSGALG00000028992 320.88 2582.55
69. TCEB3 ENSGALG00000034625 315.77 2541.43 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. CIRBP ENSGALG00000030918 314.68 2532.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
71. RPS13 ENSGALG00000006096 314.68 2532.65 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. TXN ENSGALG00000015704 313.22 2520.90 thioredoxin [Source:NCBI gene;Acc:396437]
73. HBG1 HBG1 310.66 2500.30
74. RPL37 ENSGALG00000014833 309.57 2491.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
75. RPL6 ENSGALG00000004818 306.65 2468.03 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. ENSGALG00000002696 ENSGALG00000002696 304.45 2450.32
77. MT-ND3 MT-ND3 303.36 2441.55
78. RPLP2 ENSGALG00000034811 298.61 2403.32 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
79. EIF5A2 ENSGALG00000009309 294.60 2371.04 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. GNB2L1 ENSGALG00000000122 292.04 2350.44 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
81. RPS25 ENSGALG00000007699 290.58 2338.69 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
82. RPL37A ENSGALG00000011472 283.65 2282.91 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
83. ENSGALG00000018384 ENSGALG00000018384 278.17 2238.81
84. ALDOC ENSGALG00000026077 273.06 2197.68 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
85. LDHB ENSGALG00000035836 266.12 2141.83 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. HMGN5 ENSGALG00000007131 261.74 2106.57 high mobility group nucleosome binding domain 5, transcript variant X1
87. PKM ENSGALG00000001992 251.16 2021.42 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
88. UBB ENSGALG00000004509 244.22 1965.57 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. MARCKSL1 ENSGALG00000032335 239.48 1927.42 MARCKS like 1 [Source:NCBI gene;Acc:770764]
90. PRDX1 ENSGALG00000010243 237.65 1912.69 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
91. MT-ND1 MT-ND1 236.19 1900.94
92. MIF ENSGALG00000006326 234.73 1889.19 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
93. RPL7 ENSGALG00000035252 234.00 1883.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
94. RPL10A ENSGALG00000002644 231.44 1862.71 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. HBZ ENSGALG00000023740 223.78 1801.06 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
96. HBE 222.68 1792.21 hemoglobin subunit epsilon
97. STMN1 ENSGALG00000001475 222.32 1789.31 stathmin 1 [Source:NCBI gene;Acc:396057]
98. RPL31 ENSGALG00000016775 218.30 1756.95 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. HSPA8 ENSGALG00000006512 217.94 1754.06 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. EEF1D 213.92 1721.70 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA