Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s50.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4857.08 39093.43
2. MT-ATP6 MT-ATP6 1580.48 12720.89
3. MT-ND5 MT-ND5 1117.90 8997.70
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1117.90 8997.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPL4 ENSGALG00000007711 1117.90 8997.70 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
6. RPS10 ENSGALG00000002813 1079.35 8687.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS23 ENSGALG00000015617 1079.35 8687.42 ribosomal protein S23
8. MT-ND4 MT-ND4 1040.80 8377.14
9. MT-CYB MT-CYB 925.16 7446.38
10. gga-mir-3533 ENSGALG00000027736 925.16 7446.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MDK ENSGALG00000008367 886.61 7136.10 midkine [Source:NCBI gene;Acc:423196]
12. gga-mir-3527 gga-mir-3527 886.61 7136.10
13. RPLP1 ENSGALG00000030878 848.06 6825.82 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. RPS12 ENSGALG00000013990 848.06 6825.82 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
15. RPS28 ENSGALG00000024398 848.06 6825.82 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
16. RPS8 ENSGALG00000010124 848.06 6825.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. MT-ND6 MT-ND6 770.96 6205.27
18. RPL23A ENSGALG00000003966 770.96 6205.27 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPS3A ENSGALG00000010077 770.96 6205.27 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
20. ENSGALG00000018384 ENSGALG00000018384 655.32 5274.51
21. RPL7A ENSGALG00000003197 655.32 5274.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPLP0 ENSGALG00000023294 655.32 5274.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
23. RPS15 ENSGALG00000015195 655.32 5274.51 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. EEF1A EEF1A 616.77 4964.23
25. MT-CO1 MT-CO1 616.77 4964.23
26. PPIA ENSGALG00000028600 616.77 4964.23 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. RPL13 ENSGALG00000006179 616.77 4964.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
28. RPL32 ENSGALG00000027142 616.77 4964.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
29. RPL38 ENSGALG00000001465 616.77 4964.23 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
30. RPL19 ENSGALG00000001658 578.22 4653.95 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPL5 ENSGALG00000005922 578.22 4653.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
32. RPS2 ENSGALG00000005490 578.22 4653.95 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
33. RPS6 ENSGALG00000015082 578.22 4653.95 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPL24 ENSGALG00000015339 539.68 4343.75 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
35. RPL26 RPL26 539.68 4343.75
36. RPL35 ENSGALG00000035677 539.68 4343.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
37. RPS29 ENSGALG00000012229 539.68 4343.75 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. GAPDH ENSGALG00000014442 501.13 4033.47 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
39. RPL14 ENSGALG00000043379 501.13 4033.47 ribosomal protein L14
40. RPSA 501.13 4033.47 ribosomal protein SA
41. MT-ND3 MT-ND3 462.58 3723.19
42. RPL27 ENSGALG00000002837 462.58 3723.19 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. RPL27A ENSGALG00000005948 462.58 3723.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. RPL29 ENSGALG00000026978 462.58 3723.19 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
45. RPL8 ENSGALG00000016232 462.58 3723.19 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
46. RPS7 ENSGALG00000016392 462.58 3723.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. SNRPD1 ENSGALG00000041334 462.58 3723.19 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
48. ATP5F1 424.03 3412.91 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
49. MT-ND1 MT-ND1 424.03 3412.91
50. RPS14 ENSGALG00000004588 424.03 3412.91 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
51. GNB2L1 ENSGALG00000000122 385.48 3102.63 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. H3-IX H3-IX 385.48 3102.63
53. HBG1 HBG1 385.48 3102.63
54. RAN ENSGALG00000002569 385.48 3102.63 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
55. RPS24 ENSGALG00000004871 385.48 3102.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. RPS25 ENSGALG00000007699 385.48 3102.63 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
57. STMN1 ENSGALG00000001475 385.48 3102.63 stathmin 1 [Source:NCBI gene;Acc:396057]
58. RPL37 ENSGALG00000014833 346.93 2792.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. RPL6 ENSGALG00000004818 346.93 2792.35 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. RPS15A ENSGALG00000006771 346.93 2792.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. TMSB4X ENSGALG00000026383 346.93 2792.35 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
62. TXN ENSGALG00000015704 346.93 2792.35 thioredoxin [Source:NCBI gene;Acc:396437]
63. CIRBP ENSGALG00000030918 308.39 2482.15 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. ENSGALG00000028992 ENSGALG00000028992 308.39 2482.15
65. HMGN2 HMGN2 308.39 2482.15
66. NME2 ENSGALG00000002932 308.39 2482.15 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. RPL12 ENSGALG00000008806 308.39 2482.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. RPL15 ENSGALG00000011290 308.39 2482.15 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
69. RPL21 ENSGALG00000027035 308.39 2482.15 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPL36 ENSGALG00000000474 308.39 2482.15 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
71. TCEB3 ENSGALG00000034625 308.39 2482.15 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. AKAP12 ENSGALG00000036240 269.84 2171.87 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
73. ALDOC ENSGALG00000026077 269.84 2171.87 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. COL1A2 ENSGALG00000009641 269.84 2171.87 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
75. COX7C ENSGALG00000027963 269.84 2171.87 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
76. MMP15 ENSGALG00000038758 269.84 2171.87 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
77. PHB2 ENSGALG00000014567 269.84 2171.87 prohibitin 2 [Source:NCBI gene;Acc:771124]
78. RPL18A 269.84 2171.87 ribosomal protein L18a
79. RPL23 ENSGALG00000001634 269.84 2171.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. RPS11 ENSGALG00000017299 269.84 2171.87 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
81. RPS13 ENSGALG00000006096 269.84 2171.87 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. RPS17 ENSGALG00000002157 269.84 2171.87 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
83. RPS21 ENSGALG00000005338 269.84 2171.87 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
84. RPS4 RPS4 269.84 2171.87
85. TOMM5 ENSGALG00000026300 269.84 2171.87 translocase of outer mitochondrial membrane 5
86. ZNF593 ENSGALG00000000542 269.84 2171.87 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
87. ANP32B ENSGALG00000037483 231.29 1861.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. CRHOA CRHOA 231.29 1861.60
89. ENO1 ENSGALG00000002377 231.29 1861.60 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
90. HBZ ENSGALG00000023740 231.29 1861.60 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
91. HSPA5 ENSGALG00000001000 231.29 1861.60 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
92. KARS ENSGALG00000000907 231.29 1861.60 lysyl-tRNA synthetase [Source:NCBI gene;Acc:415885]
93. RPL22 ENSGALG00000000719 231.29 1861.60 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
94. RPLP2 ENSGALG00000034811 231.29 1861.60 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. RPS20 ENSGALG00000014432 231.29 1861.60 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
96. ZC3H13 ENSGALG00000016984 231.29 1861.60 zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:HGNC:20368]
97. C5H14ORF166 C5H14ORF166 192.74 1551.32
98. DYL1 ENSGALG00000007153 192.74 1551.32 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. EIF3H ENSGALG00000040522 192.74 1551.32 eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
100. EIF5A2 ENSGALG00000009309 192.74 1551.32 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA