Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s5.

Sample reads: 124,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3364.12 27076.60
2. RPLP1 ENSGALG00000030878 1169.67 9414.26 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
3. EEF1A EEF1A 1145.80 9222.13
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1132.48 9114.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPLP0 ENSGALG00000023294 1106.38 8904.86 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS10 ENSGALG00000002813 1001.46 8060.39 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS8 ENSGALG00000010124 977.59 7868.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
8. RPL4 ENSGALG00000007711 942.06 7582.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. gga-mir-3533 ENSGALG00000027736 866.01 6970.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPS28 ENSGALG00000024398 852.13 6858.49 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
11. GAPDH ENSGALG00000014442 838.81 6751.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPS23 ENSGALG00000015617 829.37 6675.30 ribosomal protein S23
13. MT-ATP6 MT-ATP6 827.15 6657.43
14. RPL23A ENSGALG00000003966 753.87 6067.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS15 ENSGALG00000015195 726.12 5844.28 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. RPL27A ENSGALG00000005948 697.25 5611.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. RPL32 ENSGALG00000027142 694.47 5589.54 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
18. RPL8 ENSGALG00000016232 681.15 5482.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. gga-mir-3527 gga-mir-3527 658.95 5303.65
20. MT-ND5 MT-ND5 657.28 5290.21
21. RPL7A ENSGALG00000003197 656.17 5281.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL27 ENSGALG00000002837 642.85 5174.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPS12 ENSGALG00000013990 610.09 4910.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
24. RPSA 589.00 4740.65 ribosomal protein SA
25. RPL13 ENSGALG00000006179 582.89 4691.47 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
26. RPS11 ENSGALG00000017299 579.56 4664.67 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
27. RPS2 ENSGALG00000005490 563.46 4535.09 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPL26 RPL26 561.24 4517.22
29. TMSB4X ENSGALG00000026383 555.14 4468.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. RPS29 ENSGALG00000012229 544.03 4378.70 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL29 ENSGALG00000026978 535.71 4311.74 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPS21 ENSGALG00000005338 532.93 4289.36 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. SNRPD1 ENSGALG00000041334 516.83 4159.78 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
34. RPS4 RPS4 515.72 4150.85
35. RPL19 ENSGALG00000001658 509.06 4097.24 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPL38 ENSGALG00000001465 507.95 4088.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPS16 ENSGALG00000026490 496.85 3998.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. RPL24 ENSGALG00000015339 487.96 3927.42 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPS3A ENSGALG00000010077 477.42 3842.58 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. RPS6 ENSGALG00000015082 468.53 3771.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPS15A ENSGALG00000006771 459.10 3695.13 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL36AL ENSGALG00000004952 457.99 3686.20 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
43. MT-CYB MT-CYB 456.32 3672.76
44. MT-CO1 MT-CO1 454.10 3654.89
45. PPIA ENSGALG00000028600 454.10 3654.89 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
46. ENO1 ENSGALG00000002377 453.55 3650.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
47. RPL15 ENSGALG00000011290 451.88 3637.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
48. RPL21 ENSGALG00000027035 451.32 3632.51 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL18A 442.44 3561.04 ribosomal protein L18a
50. RPL36 ENSGALG00000000474 439.67 3538.75 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. RPL14 ENSGALG00000043379 437.45 3520.88 ribosomal protein L14
52. ENSGALG00000018384 ENSGALG00000018384 423.57 3409.16
53. RPL12 ENSGALG00000008806 423.57 3409.16 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. RPS14 ENSGALG00000004588 422.46 3400.23 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
55. RPS7 ENSGALG00000016392 408.58 3288.51 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. RPL35 ENSGALG00000035677 405.80 3266.14 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
57. RPS27A ENSGALG00000036790 398.03 3203.60 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. RPL5 ENSGALG00000005922 395.81 3185.73 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
59. ANP32B ENSGALG00000037483 392.48 3158.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. MT-ND4 MT-ND4 392.48 3158.93
61. RAN ENSGALG00000002569 391.93 3154.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
62. NME2 ENSGALG00000002932 369.16 2971.24 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. MT-ND3 MT-ND3 361.39 2908.70
64. GNB2L1 ENSGALG00000000122 349.18 2810.43 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
65. RPS20 ENSGALG00000014432 346.96 2792.56 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
66. MDK ENSGALG00000008367 346.40 2788.05 midkine [Source:NCBI gene;Acc:423196]
67. MT-ND6 MT-ND6 344.18 2770.18
68. RPLP2 ENSGALG00000034811 341.96 2752.31 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
69. TXN ENSGALG00000015704 339.19 2730.02 thioredoxin [Source:NCBI gene;Acc:396437]
70. TCEB3 ENSGALG00000034625 338.08 2721.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. RPS25 ENSGALG00000007699 335.86 2703.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. CIRBP ENSGALG00000030918 333.08 2680.84 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
73. RPL23 ENSGALG00000001634 332.53 2676.42 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
74. HMGN2 HMGN2 325.31 2618.30
75. ENSGALG00000002696 ENSGALG00000002696 323.09 2600.44
76. RPS13 ENSGALG00000006096 318.65 2564.70 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. RPL37 ENSGALG00000014833 316.98 2551.26 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. ENSGALG00000028992 ENSGALG00000028992 315.87 2542.32
79. RPL6 ENSGALG00000004818 315.87 2542.32 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
80. ALDOC ENSGALG00000026077 310.88 2502.16 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. ENSGALG00000028649 ENSGALG00000028649 308.66 2484.29
82. LDHB ENSGALG00000035836 307.54 2475.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. RPL7 ENSGALG00000035252 290.34 2336.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
84. RPL10A ENSGALG00000002644 283.67 2283.16 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. HBZ ENSGALG00000023740 270.35 2175.95 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
86. STMN1 ENSGALG00000001475 270.35 2175.95 stathmin 1 [Source:NCBI gene;Acc:396057]
87. RPL31 ENSGALG00000016775 265.91 2140.21 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
88. HBG1 HBG1 262.58 2113.41
89. MT-ND1 MT-ND1 262.02 2108.91
90. EIF5A2 ENSGALG00000009309 261.47 2104.48 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. UBB ENSGALG00000004509 256.47 2064.24 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. RPL37A ENSGALG00000011472 242.59 1952.52 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
93. HBE 239.26 1925.72 hemoglobin subunit epsilon
94. HMGN5 ENSGALG00000007131 238.71 1921.29 high mobility group nucleosome binding domain 5, transcript variant X1
95. EEF1D 236.49 1903.42 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. PHB2 ENSGALG00000014567 225.94 1818.51 prohibitin 2 [Source:NCBI gene;Acc:771124]
97. DYL1 ENSGALG00000007153 225.38 1814.00 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
98. RPS17 ENSGALG00000002157 218.17 1755.97 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
99. MIF ENSGALG00000006326 217.06 1747.04 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
100. HSPA8 ENSGALG00000006512 212.06 1706.80 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA