Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s49.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3647.38 29358.27
2. RPLP1 ENSGALG00000030878 1201.86 9673.94 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
3. RPLP0 ENSGALG00000023294 1160.06 9337.49 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. MDK ENSGALG00000008367 1097.35 8832.72 midkine [Source:NCBI gene;Acc:423196]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1045.10 8412.16 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS10 ENSGALG00000002813 1045.10 8412.16 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. EEF1A EEF1A 888.33 7150.29
8. RPL4 ENSGALG00000007711 877.88 7066.18 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS8 ENSGALG00000010124 846.53 6813.84 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. GAPDH ENSGALG00000014442 836.08 6729.73 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ATP6 MT-ATP6 815.17 6561.42
12. MT-ND5 MT-ND5 794.27 6393.19
13. RPS28 ENSGALG00000024398 783.82 6309.08 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. gga-mir-3533 ENSGALG00000027736 742.02 5972.62 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. TMSB4X ENSGALG00000026383 710.66 5720.20 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
16. RPS12 ENSGALG00000013990 700.21 5636.09 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL27A ENSGALG00000005948 689.76 5551.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. gga-mir-3527 gga-mir-3527 689.76 5551.98
19. RPL27 ENSGALG00000002837 679.31 5467.86 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
20. RPS23 ENSGALG00000015617 668.86 5383.75 ribosomal protein S23
21. RPL8 ENSGALG00000016232 647.96 5215.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPS15 ENSGALG00000015195 647.96 5215.52 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
23. RPL7A ENSGALG00000003197 616.61 4963.18 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL13 ENSGALG00000006179 606.16 4879.07 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPS4 RPS4 585.25 4710.76
26. MT-ND4 MT-ND4 564.35 4542.53
27. PPIA ENSGALG00000028600 564.35 4542.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. MT-ND6 MT-ND6 553.90 4458.42
29. RPS21 ENSGALG00000005338 543.45 4374.31 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPS29 ENSGALG00000012229 543.45 4374.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPSA 543.45 4374.31 ribosomal protein SA
32. RPL26 RPL26 522.55 4206.08
33. RPL29 ENSGALG00000026978 522.55 4206.08 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPL23A ENSGALG00000003966 501.65 4037.85 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
35. RPS15A ENSGALG00000006771 501.65 4037.85 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPL32 ENSGALG00000027142 491.19 3953.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL36AL ENSGALG00000004952 491.19 3953.66 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
38. SNRPD1 ENSGALG00000041334 491.19 3953.66 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. RPL21 ENSGALG00000027035 480.74 3869.54 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS3A ENSGALG00000010077 480.74 3869.54 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. RPS6 ENSGALG00000015082 459.84 3701.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. ENSGALG00000018384 ENSGALG00000018384 438.94 3533.09
43. RPL38 ENSGALG00000001465 438.94 3533.09 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPS16 ENSGALG00000026490 438.94 3533.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. MT-ND3 MT-ND3 428.49 3448.98
46. RPL35 ENSGALG00000035677 418.04 3364.86 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. RPL5 ENSGALG00000005922 418.04 3364.86 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
48. ANP32B ENSGALG00000037483 407.59 3280.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
49. RPL12 ENSGALG00000008806 407.59 3280.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
50. ENSGALG00000028992 ENSGALG00000028992 397.14 3196.64
51. RPS2 ENSGALG00000005490 397.14 3196.64 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
52. TCEB3 ENSGALG00000034625 397.14 3196.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
53. RPS11 ENSGALG00000017299 376.23 3028.33 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. MT-CYB MT-CYB 365.78 2944.21
55. RPL14 ENSGALG00000043379 355.33 2860.10 ribosomal protein L14
56. RPL24 ENSGALG00000015339 355.33 2860.10 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. RPL6 ENSGALG00000004818 355.33 2860.10 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
58. RPS27A ENSGALG00000036790 355.33 2860.10 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPL10A ENSGALG00000002644 344.88 2775.99 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. RPLP2 ENSGALG00000034811 344.88 2775.99 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
61. HBG1 HBG1 334.43 2691.87
62. RPS20 ENSGALG00000014432 334.43 2691.87 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
63. RPS7 ENSGALG00000016392 334.43 2691.87 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. ENSGALG00000018386 ENSGALG00000018386 323.98 2607.76
65. FTH FTH 323.98 2607.76
66. MT-ND1 MT-ND1 323.98 2607.76
67. RPL36 ENSGALG00000000474 323.98 2607.76 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. RPL7 ENSGALG00000035252 313.53 2523.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
69. RPL15 ENSGALG00000011290 303.08 2439.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
70. EEF1D 292.63 2355.42 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. GNB2L1 ENSGALG00000000122 292.63 2355.42 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
72. PRDX1 ENSGALG00000010243 292.63 2355.42 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. RPS14 ENSGALG00000004588 292.63 2355.42 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. HMGN2 HMGN2 282.18 2271.31
75. RPL19 ENSGALG00000001658 282.18 2271.31 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
76. DYL1 ENSGALG00000007153 271.72 2187.11 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
77. MT-CO1 MT-CO1 271.72 2187.11
78. RAN ENSGALG00000002569 271.72 2187.11 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
79. RPL23 ENSGALG00000001634 271.72 2187.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. ENO1 ENSGALG00000002377 261.27 2103.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. HBE 261.27 2103.00 hemoglobin subunit epsilon
82. HMGB2 ENSGALG00000010745 261.27 2103.00 high mobility group box 2 [Source:NCBI gene;Acc:396482]
83. HMGN5 ENSGALG00000007131 261.27 2103.00 high mobility group nucleosome binding domain 5, transcript variant X1
84. CIRBP ENSGALG00000030918 250.82 2018.89 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
85. CRHOA CRHOA 250.82 2018.89
86. MYL12A ENSGALG00000014854 240.37 1934.77 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
87. RPL31 ENSGALG00000016775 240.37 1934.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
88. STMN1 ENSGALG00000001475 240.37 1934.77 stathmin 1 [Source:NCBI gene;Acc:396057]
89. HBZ ENSGALG00000023740 229.92 1850.66 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
90. NME2 ENSGALG00000002932 229.92 1850.66 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
91. RPS17 ENSGALG00000002157 229.92 1850.66 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
92. SLC25A6_1 ENSGALG00000016691 229.92 1850.66 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. ENSGALG00000002696 ENSGALG00000002696 219.47 1766.54
94. SRSF3 ENSGALG00000000533 219.47 1766.54 serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:419815]
95. SSR1 ENSGALG00000012798 219.47 1766.54 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
96. AKAP12 ENSGALG00000036240 209.02 1682.43 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
97. RPS13 ENSGALG00000006096 209.02 1682.43 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
98. RPS25 ENSGALG00000007699 209.02 1682.43 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
99. UBB ENSGALG00000004509 209.02 1682.43 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. HSP90B1 ENSGALG00000033789 198.57 1598.32 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA