Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s47.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2470.50 19883.92
2. RPLP0 ENSGALG00000023294 1368.60 11015.24 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. MDK ENSGALG00000008367 1291.40 10393.89 midkine [Source:NCBI gene;Acc:423196]
4. gga-mir-3533 ENSGALG00000027736 1073.83 8642.77 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPLP1 ENSGALG00000030878 1017.68 8190.84 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPL4 ENSGALG00000007711 1003.64 8077.84 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. MT-ATP6 MT-ATP6 961.53 7738.91
8. RPS10 ENSGALG00000002813 919.42 7399.99 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 877.31 7061.07 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. TMSB4X ENSGALG00000026383 870.29 7004.57 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
11. GAPDH ENSGALG00000014442 765.01 6157.22 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. EEF1A EEF1A 757.99 6100.71
13. RPL7A ENSGALG00000003197 729.92 5874.79 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
14. MT-ND5 MT-ND5 708.87 5705.37
15. RPL27A ENSGALG00000005948 708.87 5705.37 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. MT-CYB MT-CYB 638.68 5140.44
17. RPS8 ENSGALG00000010124 638.68 5140.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL26 RPL26 631.66 5083.94
19. RPS23 ENSGALG00000015617 617.63 4971.02 ribosomal protein S23
20. RPL13 ENSGALG00000006179 596.57 4801.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
21. RPSA 589.55 4745.02 ribosomal protein SA
22. ENSGALG00000018384 ENSGALG00000018384 582.53 4688.52
23. RPS12 ENSGALG00000013990 568.50 4575.60 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
24. gga-mir-3527 gga-mir-3527 568.50 4575.60
25. RPS15 ENSGALG00000015195 561.48 4519.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPS28 ENSGALG00000024398 561.48 4519.10 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
27. RPS4 RPS4 554.46 4462.59
28. RPS3A ENSGALG00000010077 547.44 4406.09 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
29. RPL23A ENSGALG00000003966 533.40 4293.09 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
30. RPL8 ENSGALG00000016232 533.40 4293.09 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
31. RPL27 ENSGALG00000002837 505.33 4067.17 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
32. RPS29 ENSGALG00000012229 498.31 4010.67 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
33. RPL19 ENSGALG00000001658 470.24 3784.75 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
34. MT-ND4 MT-ND4 456.20 3671.75
35. RPS21 ENSGALG00000005338 456.20 3671.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPS2 ENSGALG00000005490 442.16 3558.74 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. RPL32 ENSGALG00000027142 435.15 3502.32 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. PPIA ENSGALG00000028600 428.13 3445.82 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
39. RPS15A ENSGALG00000006771 428.13 3445.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. RPL21 ENSGALG00000027035 414.09 3332.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPS11 ENSGALG00000017299 414.09 3332.82 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. AKAP12 ENSGALG00000036240 407.07 3276.32 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
43. RPL14 ENSGALG00000043379 407.07 3276.32 ribosomal protein L14
44. RPS14 ENSGALG00000004588 407.07 3276.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. SNRPD1 ENSGALG00000041334 407.07 3276.32 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
46. RPL15 ENSGALG00000011290 393.03 3163.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
47. GNB2L1 ENSGALG00000000122 371.98 2993.90 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
48. NUCKS1 ENSGALG00000000708 371.98 2993.90 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
49. RPLP2 ENSGALG00000034811 371.98 2993.90 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
50. RPS16 ENSGALG00000026490 371.98 2993.90 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. ANP32B ENSGALG00000037483 364.96 2937.40 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
52. ENSGALG00000002696 ENSGALG00000002696 364.96 2937.40
53. RPS7 ENSGALG00000016392 364.96 2937.40 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. CIRBP ENSGALG00000030918 350.92 2824.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
55. MT-CO1 MT-CO1 336.89 2711.47
56. RAN ENSGALG00000002569 336.89 2711.47 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. CRHOA CRHOA 315.83 2541.97
58. RPL36AL ENSGALG00000004952 315.83 2541.97 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. RPL5 ENSGALG00000005922 315.83 2541.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. ENSGALG00000028992 ENSGALG00000028992 308.81 2485.47
61. RPL24 ENSGALG00000015339 308.81 2485.47 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. RPL29 ENSGALG00000026978 308.81 2485.47 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
63. HMGN5 ENSGALG00000007131 301.79 2428.97 high mobility group nucleosome binding domain 5, transcript variant X1
64. RPL36 ENSGALG00000000474 301.79 2428.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
65. RPL38 ENSGALG00000001465 301.79 2428.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. ENSGALG00000028649 ENSGALG00000028649 294.78 2372.55
67. RPS20 ENSGALG00000014432 294.78 2372.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. SET ENSGALG00000004701 294.78 2372.55 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. RPL7 ENSGALG00000035252 287.76 2316.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
70. EEF1D 280.74 2259.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. ENSGALG00000018386 ENSGALG00000018386 280.74 2259.55
72. MT-ND1 MT-ND1 280.74 2259.55
73. RPL12 ENSGALG00000008806 280.74 2259.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. RPL6 ENSGALG00000004818 280.74 2259.55 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. MT-ND6 MT-ND6 273.72 2203.05
76. RPS6 ENSGALG00000015082 273.72 2203.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
77. STMN1 ENSGALG00000001475 273.72 2203.05 stathmin 1 [Source:NCBI gene;Acc:396057]
78. RPL35 ENSGALG00000035677 266.70 2146.55 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
79. HMGN2 HMGN2 259.68 2090.05
80. TCEB3 ENSGALG00000034625 259.68 2090.05 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. RPL23 ENSGALG00000001634 252.66 2033.54 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
82. RPS25 ENSGALG00000007699 252.66 2033.54 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
83. RPS27A ENSGALG00000036790 252.66 2033.54 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
84. MSX2 ENSGALG00000038848 245.65 1977.12 msh homeobox 2 [Source:NCBI gene;Acc:395245]
85. NME2 ENSGALG00000002932 238.63 1920.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
86. ALDOC ENSGALG00000026077 231.61 1864.12 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. GPX1 ENSGALG00000028204 231.61 1864.12 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
88. RPL10A ENSGALG00000002644 231.61 1864.12 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. ENO1 ENSGALG00000002377 217.57 1751.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
90. RPL37 ENSGALG00000014833 217.57 1751.12 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
91. HBE 210.55 1694.62 hemoglobin subunit epsilon
92. HBG1 HBG1 210.55 1694.62
93. RPL3 ENSGALG00000012172 210.55 1694.62 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. H2AFZ ENSGALG00000014023 203.54 1638.20 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
95. EIF4G2 ENSGALG00000005587 196.52 1581.70 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. EIF5A2 ENSGALG00000009309 196.52 1581.70 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
97. H3-IX H3-IX 196.52 1581.70
98. HMGB2 ENSGALG00000010745 196.52 1581.70 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. HSPA8 ENSGALG00000006512 196.52 1581.70 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. MRPL17 ENSGALG00000002605 196.52 1581.70 mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:HGNC:14053]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA