Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s46.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3880.55 31234.01
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1166.98 9392.86 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. RPS10 ENSGALG00000002813 1159.95 9336.28 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. ENSGALG00000018384 ENSGALG00000018384 1152.92 9279.69
5. EEF1A EEF1A 1019.35 8204.61
6. RPLP1 ENSGALG00000030878 942.02 7582.19 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS8 ENSGALG00000010124 892.81 7186.10 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
8. RPL4 ENSGALG00000007711 885.78 7129.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. MDK ENSGALG00000008367 864.69 6959.77 midkine [Source:NCBI gene;Acc:423196]
10. MT-ATP6 MT-ATP6 829.54 6676.85
11. gga-mir-3533 ENSGALG00000027736 801.42 6450.52 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-CYB MT-CYB 766.27 6167.60
13. RPS28 ENSGALG00000024398 752.21 6054.43 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. RPL8 ENSGALG00000016232 674.88 5432.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RPSA 674.88 5432.02 ribosomal protein SA
16. RPL7A ENSGALG00000003197 660.82 5318.85 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
17. gga-mir-3527 gga-mir-3527 646.76 5205.68
18. RPS12 ENSGALG00000013990 639.73 5149.10 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. RPLP0 ENSGALG00000023294 625.67 5035.93 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
20. RPL32 ENSGALG00000027142 611.61 4922.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
21. HBE 590.52 4753.01 hemoglobin subunit epsilon
22. HBZ ENSGALG00000023740 590.52 4753.01 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
23. RPL26 RPL26 590.52 4753.01
24. RPL27A ENSGALG00000005948 576.46 4639.85 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPL27 ENSGALG00000002837 527.25 4243.76 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. TMSB4X ENSGALG00000026383 527.25 4243.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
27. GAPDH ENSGALG00000014442 520.22 4187.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
28. HBG1 HBG1 520.22 4187.18
29. RPL19 ENSGALG00000001658 520.22 4187.18 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPL23A ENSGALG00000003966 520.22 4187.18 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPS16 ENSGALG00000026490 520.22 4187.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
32. RPS23 ENSGALG00000015617 520.22 4187.18 ribosomal protein S23
33. MT-ND5 MT-ND5 506.16 4074.01
34. RPL21 ENSGALG00000027035 506.16 4074.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. RPS15 ENSGALG00000015195 499.13 4017.43 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
36. AKAP12 ENSGALG00000036240 485.07 3904.26 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
37. MT-ND4 MT-ND4 485.07 3904.26
38. RPL13 ENSGALG00000006179 478.04 3847.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
39. RPL12 ENSGALG00000008806 463.98 3734.51 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. RPS11 ENSGALG00000017299 463.98 3734.51 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPS15A ENSGALG00000006771 456.95 3677.93 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPS3A ENSGALG00000010077 449.92 3621.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
43. RPL29 ENSGALG00000026978 442.89 3564.76 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. ENSGALG00000018386 ENSGALG00000018386 435.86 3508.18
45. ANP32B ENSGALG00000037483 421.80 3395.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
46. RPL38 ENSGALG00000001465 421.80 3395.01 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPS2 ENSGALG00000005490 421.80 3395.01 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
48. RPS29 ENSGALG00000012229 421.80 3395.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. HMGN5 ENSGALG00000007131 414.77 3338.43 high mobility group nucleosome binding domain 5, transcript variant X1
50. RPL15 ENSGALG00000011290 414.77 3338.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
51. RPL6 ENSGALG00000004818 400.71 3225.26 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPS21 ENSGALG00000005338 400.71 3225.26 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
53. RPS6 ENSGALG00000015082 400.71 3225.26 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
54. RPL24 ENSGALG00000015339 386.65 3112.09 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
55. RPL14 ENSGALG00000043379 379.62 3055.51 ribosomal protein L14
56. RPL36AL ENSGALG00000004952 365.56 2942.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. ENSGALG00000002696 ENSGALG00000002696 351.50 2829.17
58. PPIA ENSGALG00000028600 344.47 2772.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
59. RPS13 ENSGALG00000006096 344.47 2772.59 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
60. RPS4 RPS4 344.47 2772.59
61. ENSGALG00000028649 ENSGALG00000028649 323.38 2602.84
62. MT-CO1 MT-CO1 323.38 2602.84
63. RPL23 ENSGALG00000001634 323.38 2602.84 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
64. SNRPD1 ENSGALG00000041334 323.38 2602.84 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
65. CRHOA CRHOA 316.35 2546.26
66. RPS14 ENSGALG00000004588 316.35 2546.26 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. CIRBP ENSGALG00000030918 309.32 2489.67 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. RPS20 ENSGALG00000014432 309.32 2489.67 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. RPS25 ENSGALG00000007699 309.32 2489.67 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. RPL5 ENSGALG00000005922 302.29 2433.09 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
71. RPS27A ENSGALG00000036790 302.29 2433.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
72. STMN1 ENSGALG00000001475 302.29 2433.09 stathmin 1 [Source:NCBI gene;Acc:396057]
73. RPL7 ENSGALG00000035252 295.26 2376.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
74. EEF1D 288.23 2319.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. ENSGALG00000028992 ENSGALG00000028992 288.23 2319.92
76. GNB2L1 ENSGALG00000000122 281.20 2263.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
77. RPL18A 281.20 2263.34 ribosomal protein L18a
78. RPS7 ENSGALG00000016392 281.20 2263.34 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
79. NUCKS1 ENSGALG00000000708 274.17 2206.76 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
80. RPL35 ENSGALG00000035677 274.17 2206.76 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
81. DYL1 ENSGALG00000007153 260.11 2093.59 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
82. LDHB ENSGALG00000035836 260.11 2093.59 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. PRDX1 ENSGALG00000010243 260.11 2093.59 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
84. HMGN2 HMGN2 253.08 2037.01
85. NME2 ENSGALG00000002932 253.08 2037.01 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
86. RPL10A ENSGALG00000002644 253.08 2037.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. RPL36 ENSGALG00000000474 253.08 2037.01 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
88. TCEB3 ENSGALG00000034625 253.08 2037.01 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
89. ENO1 ENSGALG00000002377 239.02 1923.84 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
90. TXN ENSGALG00000015704 239.02 1923.84 thioredoxin [Source:NCBI gene;Acc:396437]
91. MT-ND6 MT-ND6 231.99 1867.26
92. MT-ND3 MT-ND3 224.96 1810.67
93. SET ENSGALG00000004701 224.96 1810.67 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. FTH FTH 217.93 1754.09
95. MSX2 ENSGALG00000038848 217.93 1754.09 msh homeobox 2 [Source:NCBI gene;Acc:395245]
96. SLC25A6_1 ENSGALG00000016691 217.93 1754.09 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. UBB ENSGALG00000004509 217.93 1754.09 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
98. RAN ENSGALG00000002569 210.90 1697.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. ATP5G3 203.87 1640.92 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. HSPA8 ENSGALG00000006512 203.87 1640.92 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA