Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s39.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3713.64 29889.62
2. RPS10 ENSGALG00000002813 1216.31 9789.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
3. EEF1A EEF1A 1153.77 9286.24
4. MT-ATP6 MT-ATP6 1069.67 8609.35
5. MDK ENSGALG00000008367 996.34 8019.15 midkine [Source:NCBI gene;Acc:423196]
6. RPLP1 ENSGALG00000030878 985.56 7932.38 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. gga-mir-3533 ENSGALG00000027736 972.62 7828.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS8 ENSGALG00000010124 953.21 7672.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
9. RPLP0 ENSGALG00000023294 905.77 7290.18 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. ENSGALG00000018384 ENSGALG00000018384 875.57 7047.12
11. GAPDH ENSGALG00000014442 821.66 6613.22 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 804.41 6474.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPL32 ENSGALG00000027142 713.83 5745.33 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
14. RPS23 ENSGALG00000015617 703.05 5658.57 ribosomal protein S23
15. MT-ND5 MT-ND5 698.73 5623.80
16. RPS12 ENSGALG00000013990 696.58 5606.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL4 ENSGALG00000007711 670.70 5398.20 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. gga-mir-3527 gga-mir-3527 662.07 5328.74
19. RPS28 ENSGALG00000024398 659.92 5311.43 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
20. MT-CYB MT-CYB 657.76 5294.05
21. RPS6 ENSGALG00000015082 623.25 5016.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. RPL8 ENSGALG00000016232 621.10 4998.99 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL27 ENSGALG00000002837 608.16 4894.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPL7A ENSGALG00000003197 603.84 4860.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RPL29 ENSGALG00000026978 595.22 4790.69 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPL27A ENSGALG00000005948 588.75 4738.62 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPSA 577.97 4651.85 ribosomal protein SA
28. RPS2 ENSGALG00000005490 571.50 4599.78 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. RPL23A ENSGALG00000003966 560.71 4512.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
30. RPS15 ENSGALG00000015195 524.05 4217.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
31. RPS11 ENSGALG00000017299 521.89 4200.49 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. RPL26 RPL26 504.64 4061.65
33. RPL21 ENSGALG00000027035 498.17 4009.57 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
34. RPL38 ENSGALG00000001465 498.17 4009.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. RPS29 ENSGALG00000012229 498.17 4009.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RPL24 ENSGALG00000015339 493.86 3974.88 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. RPL13 ENSGALG00000006179 485.23 3905.42 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPS21 ENSGALG00000005338 472.29 3801.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPS27A ENSGALG00000036790 465.82 3749.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS3A ENSGALG00000010077 463.67 3731.90 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. GNB2L1 ENSGALG00000000122 455.04 3662.44 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPS4 RPS4 450.73 3627.75
43. RPL14 ENSGALG00000043379 446.41 3592.98 ribosomal protein L14
44. RPL15 ENSGALG00000011290 446.41 3592.98 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
45. RPL6 ENSGALG00000004818 435.63 3506.21 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. RPS15A ENSGALG00000006771 433.47 3488.83 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. MT-ND4 MT-ND4 429.16 3454.14
48. RPL19 ENSGALG00000001658 422.69 3402.06 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
49. RPS16 ENSGALG00000026490 422.69 3402.06 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. MT-CO1 MT-CO1 409.75 3297.92
51. SNRPD1 ENSGALG00000041334 409.75 3297.92 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. RPL18A 405.44 3263.23 ribosomal protein L18a
53. MT-ND3 MT-ND3 398.97 3211.15
54. TMSB4X ENSGALG00000026383 390.34 3141.69 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
55. PPIA ENSGALG00000028600 388.19 3124.39 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
56. RPL35 ENSGALG00000035677 379.56 3054.93 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
57. RPL36 ENSGALG00000000474 379.56 3054.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPL36AL ENSGALG00000004952 379.56 3054.93 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. RPL12 ENSGALG00000008806 377.40 3037.54 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
60. RPL5 ENSGALG00000005922 364.46 2933.39 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. HBZ ENSGALG00000023740 360.15 2898.70 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
62. RPS14 ENSGALG00000004588 360.15 2898.70 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPS7 ENSGALG00000016392 360.15 2898.70 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. ENO1 ENSGALG00000002377 349.37 2811.94 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
65. CIRBP ENSGALG00000030918 340.74 2742.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
66. MT-ND6 MT-ND6 338.58 2725.10
67. RPS25 ENSGALG00000007699 338.58 2725.10 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. STMN1 ENSGALG00000001475 338.58 2725.10 stathmin 1 [Source:NCBI gene;Acc:396057]
69. TCEB3 ENSGALG00000034625 336.43 2707.79 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. NME2 ENSGALG00000002932 323.49 2603.64 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. ENSGALG00000028992 ENSGALG00000028992 319.17 2568.87
72. HBG1 HBG1 317.02 2551.57
73. EEF1D 314.86 2534.18 eukaryotic translation elongation factor 1 delta, transcript variant X13
74. RPS20 ENSGALG00000014432 308.39 2482.11 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. ENSGALG00000018386 ENSGALG00000018386 301.92 2430.03
76. ENSGALG00000002696 ENSGALG00000002696 299.77 2412.73
77. RPL37 ENSGALG00000014833 291.14 2343.27 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. RPS13 ENSGALG00000006096 286.83 2308.58 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. RPLP2 ENSGALG00000034811 284.67 2291.20 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
80. UBB ENSGALG00000004509 273.89 2204.43 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
81. ENSGALG00000028649 ENSGALG00000028649 269.57 2169.66
82. HMGN2 HMGN2 269.57 2169.66
83. RPL23 ENSGALG00000001634 267.42 2152.36 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
84. TXN ENSGALG00000015704 263.10 2117.59 thioredoxin [Source:NCBI gene;Acc:396437]
85. CRHOA CRHOA 260.95 2100.28
86. HBE 254.48 2048.21 hemoglobin subunit epsilon
87. HMGN5 ENSGALG00000007131 237.22 1909.29 high mobility group nucleosome binding domain 5, transcript variant X1
88. LDHB ENSGALG00000035836 232.91 1874.60 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
89. NUCKS1 ENSGALG00000000708 230.75 1857.22 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
90. RPL10A ENSGALG00000002644 230.75 1857.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. RPL31 ENSGALG00000016775 230.75 1857.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. RAN ENSGALG00000002569 222.13 1787.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
93. ANP32B ENSGALG00000037483 217.82 1753.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
94. MT-ND1 MT-ND1 217.82 1753.15
95. FTH FTH 213.50 1718.38
96. HSPA8 ENSGALG00000006512 213.50 1718.38 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
97. PRDX1 ENSGALG00000010243 211.35 1701.07 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. SET ENSGALG00000004701 211.35 1701.07 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. DYL1 ENSGALG00000007153 209.19 1683.69 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
100. RPL3 ENSGALG00000012172 209.19 1683.69 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA