Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s36.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3691.11 29709.53
2. ENSGALG00000018384 ENSGALG00000018384 2387.34 19215.56
3. EEF1A EEF1A 1203.07 9683.44
4. MT-ATP6 MT-ATP6 1072.82 8635.07
5. RPLP1 ENSGALG00000030878 1044.63 8408.17 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPS10 ENSGALG00000002813 970.78 7813.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. gga-mir-3533 ENSGALG00000027736 961.38 7738.09 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPLP0 ENSGALG00000023294 951.98 7662.43 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 903.64 7273.35 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. ENSGALG00000018386 ENSGALG00000018386 892.90 7186.90
11. MT-ND5 MT-ND5 890.22 7165.33
12. RPL4 ENSGALG00000007711 860.68 6927.56 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS23 ENSGALG00000015617 833.82 6711.37 ribosomal protein S23
14. GAPDH ENSGALG00000014442 788.17 6343.93 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS8 ENSGALG00000010124 777.43 6257.49 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. MDK ENSGALG00000008367 766.69 6171.04 midkine [Source:NCBI gene;Acc:423196]
17. gga-mir-3527 gga-mir-3527 761.32 6127.82
18. RPS28 ENSGALG00000024398 715.66 5760.31 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL32 ENSGALG00000027142 660.61 5317.21 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. RPS12 ENSGALG00000013990 648.53 5219.98 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL38 ENSGALG00000001465 624.36 5025.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
22. RPL8 ENSGALG00000016232 613.62 4938.99 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. MT-CYB MT-CYB 612.28 4928.21
24. RPS11 ENSGALG00000017299 601.53 4841.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. RPL23A ENSGALG00000003966 596.16 4798.46 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPL7A ENSGALG00000003197 586.76 4722.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPSA 586.76 4722.80 ribosomal protein SA
28. RPL27 ENSGALG00000002837 574.68 4625.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
29. RPL27A ENSGALG00000005948 570.65 4593.13 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL29 ENSGALG00000026978 569.31 4582.34 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. RPS15 ENSGALG00000015195 542.45 4366.15 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
32. RPL26 RPL26 525.00 4225.69
33. RPS6 ENSGALG00000015082 522.31 4204.04 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPL21 ENSGALG00000027035 520.97 4193.26 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. MT-CO1 MT-CO1 510.23 4106.81
36. RPS2 ENSGALG00000005490 510.23 4106.81 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. RPL13 ENSGALG00000006179 506.20 4074.37 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPS3A ENSGALG00000010077 504.86 4063.59 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPS21 ENSGALG00000005338 492.77 3966.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPS29 ENSGALG00000012229 491.43 3955.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPL15 ENSGALG00000011290 480.69 3869.05 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
42. RPS16 ENSGALG00000026490 476.66 3836.61 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. GNB2L1 ENSGALG00000000122 459.21 3696.15 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPS15A ENSGALG00000006771 456.52 3674.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. MT-ND4 MT-ND4 441.75 3555.62
46. RPS4 RPS4 435.04 3501.61
47. PPIA ENSGALG00000028600 431.01 3469.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
48. RPS27A ENSGALG00000036790 420.27 3382.73 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPL19 ENSGALG00000001658 410.87 3307.07 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
50. RPL24 ENSGALG00000015339 405.50 3263.85 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
51. RPL36AL ENSGALG00000004952 405.50 3263.85 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. SNRPD1 ENSGALG00000041334 404.16 3253.06 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
53. RPL5 ENSGALG00000005922 401.47 3231.41 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
54. RPL14 ENSGALG00000043379 394.76 3177.40 ribosomal protein L14
55. RPL36 ENSGALG00000000474 388.04 3123.31 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPL6 ENSGALG00000004818 382.67 3080.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. RPL12 ENSGALG00000008806 378.64 3047.65 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
58. TMSB4X ENSGALG00000026383 378.64 3047.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
59. RPS7 ENSGALG00000016392 374.62 3015.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
60. TCEB3 ENSGALG00000034625 369.25 2972.07 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. RPL35 ENSGALG00000035677 365.22 2939.63 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
62. ENSGALG00000002696 ENSGALG00000002696 359.85 2896.41
63. MT-ND6 MT-ND6 359.85 2896.41
64. NME2 ENSGALG00000002932 345.08 2777.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPS20 ENSGALG00000014432 342.39 2755.88 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
66. ENSGALG00000028992 ENSGALG00000028992 341.05 2745.09
67. RPLP2 ENSGALG00000034811 328.96 2647.78 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
68. RPL18A 320.91 2582.99 ribosomal protein L18a
69. RPS14 ENSGALG00000004588 320.91 2582.99 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. RPS13 ENSGALG00000006096 319.56 2572.12 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
71. EEF1D 311.51 2507.33 eukaryotic translation elongation factor 1 delta, transcript variant X13
72. RPL23 ENSGALG00000001634 308.82 2485.67 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. ENO1 ENSGALG00000002377 296.74 2388.44 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
74. HMGN2 HMGN2 296.74 2388.44
75. CIRBP ENSGALG00000030918 294.05 2366.79 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
76. RPS25 ENSGALG00000007699 290.03 2334.43 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
77. ANP32B ENSGALG00000037483 287.34 2312.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. MT-ND3 MT-ND3 279.28 2247.91
79. RPL37 ENSGALG00000014833 272.57 2193.90 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
80. STMN1 ENSGALG00000001475 271.23 2183.11 stathmin 1 [Source:NCBI gene;Acc:396057]
81. CRHOA CRHOA 265.86 2139.89
82. ENSGALG00000028649 ENSGALG00000028649 256.46 2064.23
83. AKAP12 ENSGALG00000036240 255.11 2053.37 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
84. MT-ND1 MT-ND1 253.77 2042.58
85. RPL10A ENSGALG00000002644 248.40 1999.36 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPL37A ENSGALG00000011472 233.63 1880.47 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
87. RPL7 ENSGALG00000035252 229.60 1848.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. MT-ND2 MT-ND2 225.58 1815.68
89. PRDX1 ENSGALG00000010243 224.23 1804.81 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. EIF5A2 ENSGALG00000009309 222.89 1794.03 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. RPL31 ENSGALG00000016775 214.83 1729.15 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. TXN ENSGALG00000015704 213.49 1718.37 thioredoxin [Source:NCBI gene;Acc:396437]
93. NUCKS1 ENSGALG00000000708 206.78 1664.36 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
94. RPS17 ENSGALG00000002157 205.43 1653.49 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
95. RPS24 ENSGALG00000004871 204.09 1642.71 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
96. UBB ENSGALG00000004509 197.38 1588.70 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. RAN ENSGALG00000002569 196.04 1577.91 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
98. EEF2 ENSGALG00000033884 190.66 1534.61 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
99. H3-IX H3-IX 185.29 1491.39
100. FTH FTH 182.61 1469.82
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA