Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s33.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3091.06 24882.19
2. RPLP0 ENSGALG00000023294 1257.51 10122.61 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL4 ENSGALG00000007711 1179.27 9492.80 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1089.69 8771.71 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. gga-mir-3533 ENSGALG00000027736 1063.61 8561.77 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP1 ENSGALG00000030878 1057.94 8516.13 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. MT-ATP6 MT-ATP6 1046.60 8424.84
8. RPS10 ENSGALG00000002813 975.17 7849.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS8 ENSGALG00000010124 915.07 7366.06 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. MDK ENSGALG00000008367 878.78 7073.94 midkine [Source:NCBI gene;Acc:423196]
11. RPS28 ENSGALG00000024398 875.38 7046.57 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. EEF1A EEF1A 854.97 6882.27
13. RPS12 ENSGALG00000013990 850.44 6845.81 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
14. RPS23 ENSGALG00000015617 835.70 6727.16 ribosomal protein S23
15. MT-ND5 MT-ND5 822.09 6617.60
16. GAPDH ENSGALG00000014442 817.55 6581.05 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPL13 ENSGALG00000006179 701.89 5650.02 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPL23A ENSGALG00000003966 696.22 5604.38 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPL27A ENSGALG00000005948 691.69 5567.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. gga-mir-3527 gga-mir-3527 670.14 5394.44
21. RPL8 ENSGALG00000016232 664.47 5348.80 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPS15 ENSGALG00000015195 663.34 5339.71 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
23. MT-CYB MT-CYB 637.26 5129.77
24. RPL27 ENSGALG00000002837 630.46 5075.03 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPS3A ENSGALG00000010077 630.46 5075.03 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
26. RPL7A ENSGALG00000003197 629.32 5065.85 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS2 ENSGALG00000005490 610.05 4910.74 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPSA 608.91 4901.56 ribosomal protein SA
29. RPL32 ENSGALG00000027142 606.65 4883.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
30. RPS21 ENSGALG00000005338 578.30 4655.16 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPL26 RPL26 560.15 4509.05
32. ENSGALG00000018384 ENSGALG00000018384 552.22 4445.22
33. RPL21 ENSGALG00000027035 542.01 4363.03 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
34. RPS29 ENSGALG00000012229 535.21 4308.29 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPL29 ENSGALG00000026978 532.94 4290.02 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. TMSB4X ENSGALG00000026383 522.74 4207.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. RPL15 ENSGALG00000011290 521.60 4198.74 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
38. RPL36 ENSGALG00000000474 509.13 4098.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
39. RPS4 RPS4 505.73 4070.99
40. RPL19 ENSGALG00000001658 494.39 3979.70 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
41. RPS15A ENSGALG00000006771 483.05 3888.42 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL36AL ENSGALG00000004952 480.78 3870.15 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
43. SNRPD1 ENSGALG00000041334 471.71 3797.14 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
44. RPS11 ENSGALG00000017299 459.24 3696.76 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. PPIA ENSGALG00000028600 453.57 3651.11 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
46. GNB2L1 ENSGALG00000000122 451.30 3632.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPS16 ENSGALG00000026490 447.90 3605.47 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL24 ENSGALG00000015339 439.96 3541.56 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
49. RPL5 ENSGALG00000005922 439.96 3541.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
50. MT-CO1 MT-CO1 436.56 3514.19
51. MT-ND4 MT-ND4 428.62 3450.27
52. RPS7 ENSGALG00000016392 424.08 3413.73 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. RPL12 ENSGALG00000008806 404.81 3258.61 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. RPL38 ENSGALG00000001465 403.67 3249.43 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. RPS27A ENSGALG00000036790 403.67 3249.43 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL14 ENSGALG00000043379 398.00 3203.79 ribosomal protein L14
57. RPL35 ENSGALG00000035677 394.60 3176.42 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
58. RPS14 ENSGALG00000004588 394.60 3176.42 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPS6 ENSGALG00000015082 384.40 3094.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
60. CIRBP ENSGALG00000030918 369.66 2975.66 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
61. RPL18A 352.65 2838.74 ribosomal protein L18a
62. RPLP2 ENSGALG00000034811 349.25 2811.37 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
63. NME2 ENSGALG00000002932 344.71 2774.82 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. MT-ND6 MT-ND6 339.04 2729.18
65. RPL6 ENSGALG00000004818 331.10 2665.26 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. RAN ENSGALG00000002569 328.84 2647.07 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
67. ENSGALG00000002696 ENSGALG00000002696 325.43 2619.62
68. ANP32B ENSGALG00000037483 322.03 2592.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
69. HMGN2 HMGN2 318.63 2564.88
70. TCEB3 ENSGALG00000034625 317.50 2555.79 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. ENO1 ENSGALG00000002377 312.96 2519.24 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. RPS20 ENSGALG00000014432 311.83 2510.15 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. RPS25 ENSGALG00000007699 302.76 2437.14 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. ENSGALG00000028649 ENSGALG00000028649 299.35 2409.69
75. STMN1 ENSGALG00000001475 297.09 2391.49 stathmin 1 [Source:NCBI gene;Acc:396057]
76. ENSGALG00000028992 ENSGALG00000028992 294.82 2373.22
77. MT-ND1 MT-ND1 294.82 2373.22
78. RPL37 ENSGALG00000014833 292.55 2354.95 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
79. TXN ENSGALG00000015704 292.55 2354.95 thioredoxin [Source:NCBI gene;Acc:396437]
80. RPS13 ENSGALG00000006096 290.28 2336.67 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. RPL7 ENSGALG00000035252 288.01 2318.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. RPL23 ENSGALG00000001634 284.61 2291.03 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
83. MT-ND3 MT-ND3 274.41 2208.93
84. EEF1D 260.80 2099.37 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. RPL31 ENSGALG00000016775 260.80 2099.37 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
86. RPL10A ENSGALG00000002644 259.67 2090.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. EIF5A2 ENSGALG00000009309 256.27 2062.90 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. CRHOA CRHOA 242.66 1953.35
89. ENSGALG00000018386 ENSGALG00000018386 241.52 1944.17
90. SET ENSGALG00000004701 231.32 1862.06 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
91. DYL1 ENSGALG00000007153 226.78 1825.52 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
92. ALDOC ENSGALG00000026077 221.11 1779.87 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
93. PRDX1 ENSGALG00000010243 213.18 1716.04 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. RPS17 ENSGALG00000002157 213.18 1716.04 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
95. NUCKS1 ENSGALG00000000708 206.37 1661.22 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
96. PHB2 ENSGALG00000014567 205.24 1652.13 prohibitin 2 [Source:NCBI gene;Acc:771124]
97. HBZ ENSGALG00000023740 202.97 1633.85 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
98. HMGB2 ENSGALG00000010745 193.90 1560.84 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. HSPA8 ENSGALG00000006512 189.36 1524.30 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. RPL3 ENSGALG00000012172 189.36 1524.30 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA