Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s31.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2830.79 22784.59
2. MT-ATP6 MT-ATP6 1289.18 10376.41
3. RPS10 ENSGALG00000002813 1182.50 9517.76 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. EEF1A EEF1A 1143.44 9203.37
5. RPLP0 ENSGALG00000023294 1134.42 9130.77 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. MDK ENSGALG00000008367 1105.87 8900.98 midkine [Source:NCBI gene;Acc:423196]
7. RPLP1 ENSGALG00000030878 1096.86 8828.46 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. gga-mir-3533 ENSGALG00000027736 982.66 7909.28 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. RPS8 ENSGALG00000010124 955.62 7691.64 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. RPL4 ENSGALG00000007711 891.01 7171.60 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 847.44 6820.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. GAPDH ENSGALG00000014442 821.89 6615.26 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. gga-mir-3527 gga-mir-3527 778.32 6264.58
14. RPS28 ENSGALG00000024398 766.30 6167.83 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
15. RPS23 ENSGALG00000015617 755.78 6083.16 ribosomal protein S23
16. MT-CYB MT-CYB 688.17 5538.97
17. RPS12 ENSGALG00000013990 665.63 5357.55 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPL13 ENSGALG00000006179 653.61 5260.81 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPL23A ENSGALG00000003966 653.61 5260.81 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPL27A ENSGALG00000005948 650.60 5236.58 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPL29 ENSGALG00000026978 640.08 5151.90 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPL15 ENSGALG00000011290 625.06 5031.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS15 ENSGALG00000015195 619.05 4982.64 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPSA 613.04 4934.26 ribosomal protein SA
25. RPL27 ENSGALG00000002837 610.03 4910.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPL32 ENSGALG00000027142 605.53 4873.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPL7A ENSGALG00000003197 587.49 4728.62 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS29 ENSGALG00000012229 570.97 4595.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPS2 ENSGALG00000005490 563.45 4535.12 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. RPS11 ENSGALG00000017299 558.95 4498.90 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
31. MT-ND5 MT-ND5 548.43 4414.23
32. RPL21 ENSGALG00000027035 542.42 4365.85 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. RPL8 ENSGALG00000016232 537.91 4329.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
34. RPL38 ENSGALG00000001465 534.91 4305.41 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. RPS21 ENSGALG00000005338 522.89 4208.66 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. MT-ND4 MT-ND4 519.88 4184.43
37. RPS16 ENSGALG00000026490 513.87 4136.06 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. PPIA ENSGALG00000028600 510.87 4111.91 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
39. RPL26 RPL26 509.36 4099.76
40. RPL35 ENSGALG00000035677 497.34 4003.01 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPL24 ENSGALG00000015339 492.83 3966.71 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
42. RPS15A ENSGALG00000006771 491.33 3954.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. GNB2L1 ENSGALG00000000122 486.82 3918.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPL36 ENSGALG00000000474 477.81 3845.82 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS27A ENSGALG00000036790 465.79 3749.07 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. RPS6 ENSGALG00000015082 464.29 3737.00 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. RPS4 RPS4 449.26 3616.02
48. RPL14 ENSGALG00000043379 446.26 3591.88 ribosomal protein L14
49. RPL36AL ENSGALG00000004952 443.25 3567.65 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
50. RPS3A ENSGALG00000010077 440.25 3543.50 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. SNRPD1 ENSGALG00000041334 432.73 3482.98 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. RPL19 ENSGALG00000001658 426.72 3434.60 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
53. HBZ ENSGALG00000023740 417.71 3362.08 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
54. MT-ND3 MT-ND3 408.69 3289.48
55. RPL18A 404.18 3253.18 ribosomal protein L18a
56. ENSGALG00000018384 ENSGALG00000018384 402.68 3241.11
57. MT-CO1 MT-CO1 402.68 3241.11
58. MT-ND6 MT-ND6 380.14 3059.69
59. RPL6 ENSGALG00000004818 380.14 3059.69 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. RPS14 ENSGALG00000004588 380.14 3059.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. HBG1 HBG1 378.64 3047.61
62. RPL5 ENSGALG00000005922 375.64 3023.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
63. TCEB3 ENSGALG00000034625 363.62 2926.72 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPL37 ENSGALG00000014833 360.61 2902.49 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. RPS7 ENSGALG00000016392 354.60 2854.12 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. ENSGALG00000028992 ENSGALG00000028992 348.59 2805.75
67. RPL37A ENSGALG00000011472 348.59 2805.75 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
68. ENSGALG00000028649 ENSGALG00000028649 347.09 2793.67
69. RPS13 ENSGALG00000006096 347.09 2793.67 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. RPL23 ENSGALG00000001634 344.08 2769.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. ANP32B ENSGALG00000037483 332.06 2672.70 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. RPL12 ENSGALG00000008806 330.56 2660.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPS20 ENSGALG00000014432 329.06 2648.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
74. RPS25 ENSGALG00000007699 329.06 2648.55 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. NME2 ENSGALG00000002932 327.55 2636.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
76. RPLP2 ENSGALG00000034811 309.52 2491.28 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
77. MT-ND1 MT-ND1 303.51 2442.90
78. CIRBP ENSGALG00000030918 296.00 2382.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. EEF1D 296.00 2382.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
80. ENO1 ENSGALG00000002377 296.00 2382.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. TXN ENSGALG00000015704 293.00 2358.31 thioredoxin [Source:NCBI gene;Acc:396437]
82. RPL7 ENSGALG00000035252 288.49 2322.01 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. HMGN2 HMGN2 285.48 2297.78
84. TMSB4X ENSGALG00000026383 267.45 2152.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
85. HBE 255.43 2055.92 hemoglobin subunit epsilon
86. RPL31 ENSGALG00000016775 253.93 2043.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. CRHOA CRHOA 252.43 2031.77
88. ENSGALG00000018386 ENSGALG00000018386 250.92 2019.62
89. ENSGALG00000002696 ENSGALG00000002696 247.92 1995.47
90. PRDX1 ENSGALG00000010243 246.42 1983.40 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
91. ALDOC ENSGALG00000026077 240.41 1935.02 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
92. RPS17 ENSGALG00000002157 240.41 1935.02 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
93. RPL10A ENSGALG00000002644 238.90 1922.87 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RAN ENSGALG00000002569 232.89 1874.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. STMN1 ENSGALG00000001475 231.39 1862.42 stathmin 1 [Source:NCBI gene;Acc:396057]
96. FTH FTH 226.88 1826.12
97. NUCKS1 ENSGALG00000000708 226.88 1826.12 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
98. ENSGALG00000022570 ENSGALG00000022570 225.38 1814.05
99. UBB ENSGALG00000004509 216.37 1741.53 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. RPL3 ENSGALG00000012172 213.36 1717.30 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA