Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s30.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3417.75 27511.80
2. EEF1A EEF1A 1228.16 9886.30
3. MT-ATP6 MT-ATP6 1165.70 9383.51
4. RPLP1 ENSGALG00000030878 1106.61 8907.86 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPLP0 ENSGALG00000023294 1031.49 8303.17 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. HBG1 HBG1 926.82 7460.61
7. RPS10 ENSGALG00000002813 919.22 7399.43 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MDK ENSGALG00000008367 917.53 7385.82 midkine [Source:NCBI gene;Acc:423196]
9. gga-mir-3533 ENSGALG00000027736 871.11 7012.16 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 869.42 6998.55 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS28 ENSGALG00000024398 845.78 6808.26 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. RPS8 ENSGALG00000010124 829.75 6679.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS23 ENSGALG00000015617 820.46 6604.44 ribosomal protein S23
14. MT-ND5 MT-ND5 808.64 6509.29
15. RPL4 ENSGALG00000007711 783.32 6305.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. HBZ ENSGALG00000023740 763.06 6142.39 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
17. GAPDH ENSGALG00000014442 745.34 5999.75 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS12 ENSGALG00000013990 701.44 5646.37 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. RPL27A ENSGALG00000005948 694.69 5592.03 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. RPL32 ENSGALG00000027142 661.77 5327.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
21. gga-mir-3527 gga-mir-3527 646.58 5204.76
22. RPS11 ENSGALG00000017299 625.48 5034.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
23. RPL13 ENSGALG00000006179 619.57 4987.34 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
24. RPL15 ENSGALG00000011290 615.35 4953.37 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL23A ENSGALG00000003966 611.13 4919.40 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. MT-CYB MT-CYB 606.91 4885.43
27. RPS15 ENSGALG00000015195 605.22 4871.83 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
28. RPL38 ENSGALG00000001465 595.09 4790.29 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
29. RPL29 ENSGALG00000026978 591.71 4763.08 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. HBE 589.18 4742.71 hemoglobin subunit epsilon
31. RPS21 ENSGALG00000005338 567.23 4566.02 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPL7A ENSGALG00000003197 560.48 4511.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL26 RPL26 550.35 4430.14
34. RPS2 ENSGALG00000005490 546.97 4402.93 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
35. RPS3A ENSGALG00000010077 543.60 4375.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
36. RPSA 543.60 4375.81 ribosomal protein SA
37. RPL8 ENSGALG00000016232 541.07 4355.44 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
38. RPL27 ENSGALG00000002837 531.78 4280.66 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS29 ENSGALG00000012229 527.56 4246.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
40. RPL19 ENSGALG00000001658 525.87 4233.09 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
41. RPS6 ENSGALG00000015082 505.61 4070.00 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
42. RPS15A ENSGALG00000006771 495.48 3988.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. PPIA ENSGALG00000028600 492.11 3961.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. ENSGALG00000018384 ENSGALG00000018384 481.14 3873.02
45. MT-ND6 MT-ND6 466.79 3757.51
46. GNB2L1 ENSGALG00000000122 455.81 3669.13 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPL24 ENSGALG00000015339 449.90 3621.55 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
48. RPS27A ENSGALG00000036790 441.46 3553.61 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPS4 RPS4 438.93 3533.25
50. RPL12 ENSGALG00000008806 434.71 3499.28 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
51. RPL35 ENSGALG00000035677 434.71 3499.28 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
52. RPL21 ENSGALG00000027035 427.11 3438.10 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPS16 ENSGALG00000026490 414.45 3336.19 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. MT-ND3 MT-ND3 407.70 3281.86
55. RPL36AL ENSGALG00000004952 404.32 3254.65 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. MT-ND4 MT-ND4 403.48 3247.89
57. RPL36 ENSGALG00000000474 401.79 3234.28 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. MT-CO1 MT-CO1 394.19 3173.10
59. TCEB3 ENSGALG00000034625 389.97 3139.13 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. RPL6 ENSGALG00000004818 387.44 3118.77 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. RPS7 ENSGALG00000016392 387.44 3118.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL14 ENSGALG00000043379 386.60 3112.01 ribosomal protein L14
63. RPS20 ENSGALG00000014432 362.12 2914.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. SNRPD1 ENSGALG00000041334 356.21 2867.38 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
65. RPS13 ENSGALG00000006096 351.99 2833.41 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. NME2 ENSGALG00000002932 348.61 2806.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. RPL23 ENSGALG00000001634 348.61 2806.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. RPS14 ENSGALG00000004588 343.55 2765.47 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
69. RPL37 ENSGALG00000014833 342.70 2758.63 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. RPL5 ENSGALG00000005922 341.02 2745.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
71. TXN ENSGALG00000015704 331.73 2670.32 thioredoxin [Source:NCBI gene;Acc:396437]
72. RPLP2 ENSGALG00000034811 316.54 2548.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
73. STMN1 ENSGALG00000001475 316.54 2548.05 stathmin 1 [Source:NCBI gene;Acc:396057]
74. TMSB4X ENSGALG00000026383 308.94 2486.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
75. ENSGALG00000028992 ENSGALG00000028992 300.50 2418.93
76. ENSGALG00000002696 ENSGALG00000002696 297.97 2398.56
77. ENSGALG00000018386 ENSGALG00000018386 293.75 2364.59
78. MT-ND1 MT-ND1 292.90 2357.75
79. CIRBP ENSGALG00000030918 284.46 2289.81 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
80. RPL18A 283.62 2283.05 ribosomal protein L18a
81. RPS25 ENSGALG00000007699 281.93 2269.45 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
82. ENSGALG00000028649 ENSGALG00000028649 276.02 2221.87
83. HMGN2 HMGN2 256.61 2065.63
84. ANP32B ENSGALG00000037483 255.76 2058.79 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. EEF1D 254.92 2052.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. ENO1 ENSGALG00000002377 254.07 2045.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
87. UBB ENSGALG00000004509 250.70 2018.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
88. RPL37A ENSGALG00000011472 249.85 2011.21 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
89. RPL7 ENSGALG00000035252 249.01 2004.45 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
90. RPS17 ENSGALG00000002157 243.94 1963.64 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
91. PRDX1 ENSGALG00000010243 239.72 1929.67 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. CRHOA CRHOA 238.04 1916.15
93. RPL31 ENSGALG00000016775 237.19 1909.30 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
94. NUCKS1 ENSGALG00000000708 221.15 1780.19 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
95. EIF5A2 ENSGALG00000009309 218.62 1759.82 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
96. RPL10A ENSGALG00000002644 214.40 1725.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. RPL3 ENSGALG00000012172 203.43 1637.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. ALDOC ENSGALG00000026077 198.36 1596.73 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
99. H3-IX H3-IX 194.99 1569.61
100. SLC25A6_1 ENSGALG00000016691 192.45 1549.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA