Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s3.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2826.41 22749.49
2. RPLP0 ENSGALG00000023294 1202.07 9675.34 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPLP1 ENSGALG00000030878 1179.12 9490.62 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. EEF1A EEF1A 1079.98 8692.65
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1055.66 8496.90 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. GAPDH ENSGALG00000014442 1046.48 8423.01 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ATP6 MT-ATP6 983.60 7916.90
8. RPL4 ENSGALG00000007711 983.60 7916.90 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS10 ENSGALG00000002813 949.63 7643.48 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS8 ENSGALG00000010124 939.08 7558.56 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. gga-mir-3533 ENSGALG00000027736 857.38 6900.96 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPS28 ENSGALG00000024398 856.00 6889.86 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
13. RPS23 ENSGALG00000015617 838.10 6745.78 ribosomal protein S23
14. RPS15 ENSGALG00000015195 765.12 6158.37 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
15. RPL23A ENSGALG00000003966 750.44 6040.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
16. RPL32 ENSGALG00000027142 703.16 5659.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
17. RPL27A ENSGALG00000005948 701.78 5648.56 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPS12 ENSGALG00000013990 693.98 5585.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. RPL13 ENSGALG00000006179 654.05 5264.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL15 ENSGALG00000011290 654.05 5264.38 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL7A ENSGALG00000003197 644.87 5190.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL8 ENSGALG00000016232 638.90 5142.44 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS11 ENSGALG00000017299 625.59 5035.31 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
24. RPL27 ENSGALG00000002837 621.46 5002.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPL29 ENSGALG00000026978 618.25 4976.23 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPSA 609.53 4906.04 ribosomal protein SA
27. RPS2 ENSGALG00000005490 603.56 4857.99 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. gga-mir-3527 gga-mir-3527 591.17 4758.27
29. RPL19 ENSGALG00000001658 573.73 4617.89 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. TMSB4X ENSGALG00000026383 573.27 4614.19 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
31. MT-ND5 MT-ND5 570.51 4591.98
32. RPL26 RPL26 553.53 4455.31
33. MT-CYB MT-CYB 548.48 4414.66
34. PPIA ENSGALG00000028600 542.06 4362.99 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
35. RPS29 ENSGALG00000012229 538.84 4337.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RPS4 RPS4 534.26 4300.20
37. RPL38 ENSGALG00000001465 522.32 4204.10 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. SNRPD1 ENSGALG00000041334 517.73 4167.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. RPS21 ENSGALG00000005338 502.59 4045.30 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPS3A ENSGALG00000010077 494.78 3982.43 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. RPL14 ENSGALG00000043379 483.31 3890.11 ribosomal protein L14
42. RPL35 ENSGALG00000035677 479.18 3856.87 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
43. RPS15A ENSGALG00000006771 476.42 3834.66 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPS6 ENSGALG00000015082 474.59 3819.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
45. RPL18A 457.15 3679.55 ribosomal protein L18a
46. RPS16 ENSGALG00000026490 449.34 3616.69 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. MDK ENSGALG00000008367 443.84 3572.42 midkine [Source:NCBI gene;Acc:423196]
48. ENO1 ENSGALG00000002377 437.41 3520.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
49. RPL24 ENSGALG00000015339 431.44 3472.62 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
50. GNB2L1 ENSGALG00000000122 428.23 3446.78 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPL36AL ENSGALG00000004952 422.26 3398.73 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPL5 ENSGALG00000005922 422.26 3398.73 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
53. RPS14 ENSGALG00000004588 416.76 3354.46 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
54. RPL12 ENSGALG00000008806 413.54 3328.54 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
55. RPL21 ENSGALG00000027035 405.28 3262.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPS27A ENSGALG00000036790 402.53 3239.92 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. RPS7 ENSGALG00000016392 398.40 3206.68 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. MT-CO1 MT-CO1 389.68 3136.49
59. RPL36 ENSGALG00000000474 387.84 3121.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
60. MT-ND4 MT-ND4 387.38 3117.98
61. NME2 ENSGALG00000002932 386.00 3106.87 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. RAN ENSGALG00000002569 378.20 3044.09 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. ALDOC ENSGALG00000026077 365.35 2940.66 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. ANP32B ENSGALG00000037483 361.22 2907.42 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. RPS13 ENSGALG00000006096 359.38 2892.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. RPS20 ENSGALG00000014432 354.33 2851.97 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
67. CIRBP ENSGALG00000030918 349.74 2815.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. RPL6 ENSGALG00000004818 335.97 2704.19 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. HMGN2 HMGN2 335.06 2696.86
70. RPL23 ENSGALG00000001634 331.38 2667.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. ENSGALG00000028992 ENSGALG00000028992 325.88 2622.97
72. ENSGALG00000028649 ENSGALG00000028649 322.21 2593.44
73. RPS25 ENSGALG00000007699 318.07 2560.11 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. TCEB3 ENSGALG00000034625 316.70 2549.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. MT-ND6 MT-ND6 313.48 2523.17
76. ENSGALG00000002696 ENSGALG00000002696 310.27 2497.33
77. MT-ND3 MT-ND3 308.89 2486.22
78. RPLP2 ENSGALG00000034811 308.89 2486.22 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
79. ENSGALG00000018384 ENSGALG00000018384 307.06 2471.49
80. EIF5A2 ENSGALG00000009309 306.14 2464.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
81. LDHB ENSGALG00000035836 302.01 2430.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
82. RPL37 ENSGALG00000014833 301.55 2427.15 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
83. TXN ENSGALG00000015704 291.45 2345.85 thioredoxin [Source:NCBI gene;Acc:396437]
84. RPL37A ENSGALG00000011472 268.96 2164.83 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
85. PKM ENSGALG00000001992 265.75 2138.99 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
86. RPL7 ENSGALG00000035252 262.08 2109.46 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. HMGN5 ENSGALG00000007131 255.19 2054.00 high mobility group nucleosome binding domain 5, transcript variant X1
88. STMN1 ENSGALG00000001475 255.19 2054.00 stathmin 1 [Source:NCBI gene;Acc:396057]
89. PRDX1 ENSGALG00000010243 251.06 2020.76 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. EEF1D 247.85 1994.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. MIF ENSGALG00000006326 247.85 1994.92 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
92. RPL10A ENSGALG00000002644 247.85 1994.92 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. RPL31 ENSGALG00000016775 241.88 1946.87 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
94. ENSGALG00000022570 ENSGALG00000022570 235.46 1895.19
95. ENSGALG00000018386 ENSGALG00000018386 229.49 1847.14
96. PHB2 ENSGALG00000014567 229.03 1843.44 prohibitin 2 [Source:NCBI gene;Acc:771124]
97. RPS17 ENSGALG00000002157 223.98 1802.79 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
98. MT-ND1 MT-ND1 221.23 1780.66
99. UBB ENSGALG00000004509 220.31 1773.25 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. ATP5G3 214.34 1725.20 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA