Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s25.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3437.53 27671.36
2. MT-ATP6 MT-ATP6 1706.81 13739.44
3. ENSGALG00000018384 ENSGALG00000018384 1486.78 11968.25
4. MT-ND5 MT-ND5 1340.56 10791.21
5. gga-mir-3533 ENSGALG00000027736 1323.69 10655.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 1232.31 9919.82
7. RPLP0 ENSGALG00000023294 1047.43 8431.58 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPLP1 ENSGALG00000030878 990.49 7973.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 888.55 7152.63 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. RPL4 ENSGALG00000007711 851.30 6852.78 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPS10 ENSGALG00000002813 847.08 6818.81 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. MDK ENSGALG00000008367 844.27 6796.19 midkine [Source:NCBI gene;Acc:423196]
13. RPS8 ENSGALG00000010124 793.65 6388.71 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPS28 ENSGALG00000024398 759.21 6111.47 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
15. gga-mir-3527 gga-mir-3527 746.55 6009.56
16. RPS23 ENSGALG00000015617 726.87 5851.14 ribosomal protein S23
17. MT-CYB MT-CYB 691.72 5568.19
18. RPSA 623.53 5019.28 ribosomal protein SA
19. GAPDH ENSGALG00000014442 608.07 4894.83 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPS12 ENSGALG00000013990 587.68 4730.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL32 ENSGALG00000027142 586.98 4725.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
22. RPL27A ENSGALG00000005948 563.08 4532.67 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL7A ENSGALG00000003197 537.07 4323.29 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL23A ENSGALG00000003966 532.85 4289.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
25. TMSB4X ENSGALG00000026383 524.42 4221.47 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. RPS2 ENSGALG00000005490 521.60 4198.76 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. MT-ND4 MT-ND4 517.39 4164.88
28. RPS11 ENSGALG00000017299 516.68 4159.16 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
29. RPL13 ENSGALG00000006179 511.76 4119.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
30. RPL27 ENSGALG00000002837 506.14 4074.32 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPL26 RPL26 500.52 4029.08
32. RPL29 ENSGALG00000026978 478.02 3847.96 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPL8 ENSGALG00000016232 471.69 3797.00 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
34. RPS15A ENSGALG00000006771 469.58 3780.02 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS15 ENSGALG00000015195 459.74 3700.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
36. GNB2L1 ENSGALG00000000122 453.42 3649.93 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
37. PPIA ENSGALG00000028600 451.31 3632.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
38. MT-ND6 MT-ND6 446.39 3593.34
39. MT-CO1 MT-CO1 443.57 3570.64
40. RPS29 ENSGALG00000012229 443.57 3570.64 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPL21 ENSGALG00000027035 442.87 3565.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
42. RPS21 ENSGALG00000005338 442.87 3565.01 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
43. RPL19 ENSGALG00000001658 441.47 3553.74 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
44. RPL15 ENSGALG00000011290 440.76 3548.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
45. RPS3A ENSGALG00000010077 434.44 3497.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
46. RPS4 RPS4 432.33 3480.16
47. RPS6 ENSGALG00000015082 424.59 3417.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
48. ENSGALG00000018386 ENSGALG00000018386 417.56 3361.27
49. SNRPD1 ENSGALG00000041334 402.10 3236.82 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
50. RPL5 ENSGALG00000005922 398.58 3208.48 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
51. RPL14 ENSGALG00000043379 391.55 3151.89 ribosomal protein L14
52. RPS16 ENSGALG00000026490 388.74 3129.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPL36AL ENSGALG00000004952 386.63 3112.29 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. RPL38 ENSGALG00000001465 381.71 3072.68 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. RPL24 ENSGALG00000015339 380.31 3061.41 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
56. RPL6 ENSGALG00000004818 371.17 2987.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. RPL35 ENSGALG00000035677 363.44 2925.61 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
58. ENSGALG00000002696 ENSGALG00000002696 357.81 2880.29
59. NME2 ENSGALG00000002932 351.49 2829.42 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPL12 ENSGALG00000008806 350.78 2823.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
61. RPS14 ENSGALG00000004588 343.75 2767.11 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. ENSGALG00000028992 ENSGALG00000028992 339.53 2733.14
63. ANP32B ENSGALG00000037483 328.29 2642.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
64. CIRBP ENSGALG00000030918 325.48 2620.04 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
65. RPS7 ENSGALG00000016392 320.55 2580.36 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. RPS27A ENSGALG00000036790 315.63 2540.75 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. RPS25 ENSGALG00000007699 313.52 2523.77 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPL36 ENSGALG00000000474 303.68 2444.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. AKAP12 ENSGALG00000036240 297.36 2393.68 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
70. RPL18A 297.36 2393.68 ribosomal protein L18a
71. RPS13 ENSGALG00000006096 295.25 2376.70 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPLP2 ENSGALG00000034811 293.84 2365.35 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
73. MT-ND3 MT-ND3 289.62 2331.38
74. TXN ENSGALG00000015704 283.30 2280.50 thioredoxin [Source:NCBI gene;Acc:396437]
75. RPS20 ENSGALG00000014432 276.27 2223.91 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
76. ENO1 ENSGALG00000002377 274.86 2212.56 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. MT-ND1 MT-ND1 267.13 2150.34
78. TCEB3 ENSGALG00000034625 260.10 2093.75 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
79. RPL23 ENSGALG00000001634 256.58 2065.41 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. ENSGALG00000028649 ENSGALG00000028649 253.07 2037.16
81. CRHOA CRHOA 248.85 2003.19
82. EEF1D 246.04 1980.57 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. RPL37 ENSGALG00000014833 244.63 1969.22 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
84. STMN1 ENSGALG00000001475 242.52 1952.23 stathmin 1 [Source:NCBI gene;Acc:396057]
85. MT-ND2 MT-ND2 236.20 1901.36
86. HMGN2 HMGN2 231.28 1861.75
87. RAN ENSGALG00000002569 231.28 1861.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
88. EIF5A2 ENSGALG00000009309 229.17 1844.77 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. NUCKS1 ENSGALG00000000708 229.17 1844.77 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
90. ALDOC ENSGALG00000026077 221.44 1782.54 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
91. HMGN5 ENSGALG00000007131 221.44 1782.54 high mobility group nucleosome binding domain 5, transcript variant X1
92. RPL7 ENSGALG00000035252 217.92 1754.21 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
93. RPL31 ENSGALG00000016775 215.11 1731.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
94. PRDX1 ENSGALG00000010243 208.08 1675.00 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
95. UBB ENSGALG00000004509 207.38 1669.36 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
96. HBG1 HBG1 197.53 1590.07
97. NCL ENSGALG00000032930 197.53 1590.07 nucleolin [Source:NCBI gene;Acc:396201]
98. RPL3 ENSGALG00000012172 196.83 1584.44 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. FTH FTH 195.43 1573.17
100. SET ENSGALG00000004701 194.72 1567.45 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA