Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s24.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4380.78 35260.63
2. ENSGALG00000018384 ENSGALG00000018384 1914.10 15406.48
3. MT-ATP6 MT-ATP6 1319.19 10618.08
4. RPLP1 ENSGALG00000030878 1204.32 9693.50 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1154.75 9294.51
6. gga-mir-3533 ENSGALG00000027736 1039.88 8369.93 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 961.28 7737.28 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. MT-ND5 MT-ND5 958.86 7717.81
9. RPS10 ENSGALG00000002813 910.50 7328.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP0 ENSGALG00000023294 876.64 7056.02 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. MT-CYB MT-CYB 869.38 6997.59
12. RPS23 ENSGALG00000015617 869.38 6997.59 ribosomal protein S23
13. RPS8 ENSGALG00000010124 845.20 6802.96 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPS28 ENSGALG00000024398 793.21 6384.50 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
15. RPL4 ENSGALG00000007711 790.79 6365.02 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS12 ENSGALG00000013990 691.64 5566.97 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. MDK ENSGALG00000008367 688.01 5537.75 midkine [Source:NCBI gene;Acc:423196]
18. gga-mir-3527 gga-mir-3527 686.80 5528.01
19. RPS6 ENSGALG00000015082 656.57 5284.69 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. GAPDH ENSGALG00000014442 644.48 5187.38 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. ENSGALG00000018386 ENSGALG00000018386 643.27 5177.64
22. RPL32 ENSGALG00000027142 623.93 5021.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
23. RPL7A ENSGALG00000003197 623.93 5021.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPSA 597.32 4807.79 ribosomal protein SA
25. RPL27 ENSGALG00000002837 594.91 4788.39 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPS11 ENSGALG00000017299 587.65 4729.96 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
27. RPL38 ENSGALG00000001465 565.89 4554.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
28. PPIA ENSGALG00000028600 557.42 4486.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
29. RPL29 ENSGALG00000026978 536.87 4321.23 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL23A ENSGALG00000003966 535.66 4311.49 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPL8 ENSGALG00000016232 535.66 4311.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPL26 RPL26 532.03 4282.28
33. MT-CO1 MT-CO1 524.77 4223.84
34. RPS15 ENSGALG00000015195 517.52 4165.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
35. RPL27A ENSGALG00000005948 512.68 4126.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPS3A ENSGALG00000010077 512.68 4126.53 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
37. RPL19 ENSGALG00000001658 511.47 4116.79 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. GNB2L1 ENSGALG00000000122 496.96 4000.00 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
39. MT-ND4 MT-ND4 492.13 3961.12
40. RPS21 ENSGALG00000005338 487.29 3922.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL21 ENSGALG00000027035 478.83 3854.07 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
42. RPL13 ENSGALG00000006179 472.78 3805.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
43. RPS29 ENSGALG00000012229 469.15 3776.16 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. MT-ND6 MT-ND6 458.27 3688.59
45. RPS16 ENSGALG00000026490 457.06 3678.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPS2 ENSGALG00000005490 457.06 3678.85 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
47. RPL36AL ENSGALG00000004952 441.34 3552.32 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
48. RPL5 ENSGALG00000005922 419.58 3377.17 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
49. RPL15 ENSGALG00000011290 417.16 3357.70 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
50. RPL24 ENSGALG00000015339 414.74 3338.22 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
51. TMSB4X ENSGALG00000026383 411.11 3309.00 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
52. RPL12 ENSGALG00000008806 408.70 3289.60 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
53. RPS27A ENSGALG00000036790 402.65 3240.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. NME2 ENSGALG00000002932 400.23 3221.43 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. RPS14 ENSGALG00000004588 400.23 3221.43 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. RPL14 ENSGALG00000043379 383.30 3085.16 ribosomal protein L14
57. RPS4 RPS4 380.88 3065.68
58. RPS15A ENSGALG00000006771 377.26 3036.54 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. RPL35 ENSGALG00000035677 361.54 2910.01 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
60. RPS7 ENSGALG00000016392 361.54 2910.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
61. SNRPD1 ENSGALG00000041334 353.07 2841.84 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
62. TCEB3 ENSGALG00000034625 347.03 2793.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. RPL36 ENSGALG00000000474 342.19 2754.27 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
64. RPL6 ENSGALG00000004818 331.31 2666.69 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. RPS20 ENSGALG00000014432 324.05 2608.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
66. RPL18A 322.85 2598.60 ribosomal protein L18a
67. ENSGALG00000028992 ENSGALG00000028992 321.64 2588.86
68. ENSGALG00000002696 ENSGALG00000002696 313.17 2520.69
69. RPLP2 ENSGALG00000034811 311.96 2510.95 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
70. EEF1D 307.13 2472.07 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. ENO1 ENSGALG00000002377 298.66 2403.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. MT-ND3 MT-ND3 297.45 2394.16
73. UBB ENSGALG00000004509 297.45 2394.16 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. HMGN2 HMGN2 295.03 2374.68
75. RPS13 ENSGALG00000006096 291.41 2345.54 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. RPL23 ENSGALG00000001634 290.20 2335.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. ENSGALG00000028649 ENSGALG00000028649 286.57 2306.58
78. CIRBP ENSGALG00000030918 281.73 2267.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. AKAP12 ENSGALG00000036240 275.69 2219.01 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
80. ANP32B ENSGALG00000037483 269.64 2170.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. RPS25 ENSGALG00000007699 269.64 2170.32 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
82. PRDX1 ENSGALG00000010243 268.43 2160.58 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. CRHOA CRHOA 262.39 2111.96
84. TXN ENSGALG00000015704 258.76 2082.74 thioredoxin [Source:NCBI gene;Acc:396437]
85. HMGN5 ENSGALG00000007131 257.55 2073.00 high mobility group nucleosome binding domain 5, transcript variant X1
86. MT-ND2 MT-ND2 256.34 2063.27
87. RPL37 ENSGALG00000014833 251.50 2024.31 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
88. RPL10A ENSGALG00000002644 244.25 1965.95 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. MT-ND1 MT-ND1 233.37 1878.38
90. STMN1 ENSGALG00000001475 232.16 1868.64 stathmin 1 [Source:NCBI gene;Acc:396057]
91. EIF5A2 ENSGALG00000009309 228.53 1839.42 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. FTH FTH 226.11 1819.95
93. SLC25A6_1 ENSGALG00000016691 226.11 1819.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. RPL7 ENSGALG00000035252 224.90 1810.21 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
95. H3-IX H3-IX 221.28 1781.07
96. RPL31 ENSGALG00000016775 221.28 1781.07 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
97. ATP5G3 215.23 1732.37 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
98. HBZ ENSGALG00000023740 215.23 1732.37 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
99. RPL37A ENSGALG00000011472 212.81 1712.89 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
100. RPS24 ENSGALG00000004871 210.39 1693.42 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA